RNA id: TU236802


Basic Information

Item Value
RNA id TU236802
length 2574
RNA type TUCP
GC content 0.41
exon number 5
gene id G174874
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 10832168 ~ 11019418 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTTCTTATAATTATGATGCGTATCTAACAACAGGCTCACGCACCAGTGACTTCAAGTTTGTCAGATCCTACAATGATAATACACTTCCTGCCAGTGGCACTCTCAAAATGTGCCAGGATGATCCCTTTGGTTCAAGCATTATCAACACTGATTGCATTGAGCAAAAGCCACCTAACAATGACTGGCGCATGCCCCCAAACCAGAGACCCGGACCAAGTGGAGCTGGACCTCGTCCTGAGGAAGCTGGTGCAGGTGCAGTAGGTGGGACGGGACCATGGCCCAACCCCCCCCACCGAAGCCGAACAGCTCCAGGCTCTGATGGCTGCAGCGAATGCAAATGAAGCTACCGCGACTTTGGGTCCTCGCTACAATGCTCAGTATGTCCCTGACTACCGCCAGAACGTCTACATCCCAGGCAGCACCGCTACGCTTACGGCTAacccccagcagcagcagatgccCCAGCAGGCTCTACCCCCACCACAAGCCCTGCCTCCAACAGAGGCTCCAAAGGCTGCCCCAACTCCGGCCAGCAAGAAGAAGGTCACCAAGAAAGACAAGAAGTAAGACGGAGTGAGAGAACAGACAGAGGGAGAATTAGCTGAGCTATATAGATCCGGGCATTTCTCCTCTGCACGTGTTAGCTTTTCCCTCTCTAGAATGTTGACACCCCTTAAACTCTAGGCTTATTGTTCATTAATACACACTATCCAGGATGATTGGGTACCTTCTATCACAGCTACTGTTTAAGGATGTTTCGATACAATTGCAAGGAATGGAAGTCGTAGAGTTTAAGGGGTTTATAATCAGAATATTCTGAGACATTTCAGCTGTATttggttttctgtttttttgaatTTGTATTTCTTAGTCTACGGTGTAACTCACCACTTCCTTTAATCATTATTGGTATTTTTTTGGTGTACTGCAACATCAAGAAGGACATAGTAGGATGAGATGTGTTTAGATCCCAAAGTGACCCTTTACGCAGGGAAGTCTGTCTTGTAAgatagattttaaaaaaaatactgattctTTGTCATGTTAAgttttttgtgttctttttaatGCAAAGTAGATCCTTCTTGTTgtgacaaatatttaaaaaaaatgtcaatgttAGAATTCTCAAGAGGATGTGCCATAGCTCTGCCCCAAcccttattatattattttttttttttgcatgctcCACTTTGACATCAGTAAGGGTATTGAAAATGAACTATGCAGTGTGGCAAAGATGTTAAAGCAAAGATGCAAATTTCGGTAAATGCTAAAAATGATTAGAATTAGAGAATGCATTTCTTTGTAAACCAGCAGCAACTGAAAAGCTGGACTGAAAAGTTCTAAGAAAGTAAAAACCTGGTATCATTCTAAAAAGCGAGTTAGAAACACCCATCAATGTTACTGCGATACTATTAATAGTCGTAAATATCAATCCTGTGGACTTGCATTAGATAATGTTTGCCATGTATAAAACCTTGGATAAGGTGGCAGATACCCAGACTGTTAGCCTGTGTGTTATGCCATATTGGTTAAGTGTTAGTGAACAGGGGCTTGTGCTCCAAGAGTGATGAAAAAGTGCTTAAGCAGAAGATGACTGGGTTGGTGTGTCATTTGCTTGGGTTCTATGTTTGGGGTTGAGAAGAAGTTAGAAAGGCACTGGGTAACATAAGCACTGTACGCAGGTTTGATGCTCCAAAGTGGGCCTCACGCAAATGAAGGCAATTTCTGTAAAGACATTTCCAACTGAGAAGAACAACAGATCAGATAACTGGTCTTAAACTCTCGGTAGGCCACTCCATCCTTGGCCAGCTTCAAGAGAGTGGAATGAGGAGCTCCTTACTCCTCAAAATTCTGCACAACCCTAATATAAATGCACCAACCCTTCATCACAGTGTAAATAAGATACAGTATGTAACCTGTCTGTATAAACTAGAGCCACAAGGTTCAGGCCAACACAGGAatgtttcagtattttttagaaaaacagaaaagaaaaaatacataaaaaaacataaaactgatCAAGTGTAGTGCTATAGATACAAAAGCTTCGAGCTCACTGACTAACTCAACTTGTACATAAAACCTGCAGTCTCCGCAAGACATGCAGCTTAGTAGCTTATAGGGCTTGTGAAAATGTGtgcatatttttgtgttttttccttctcttttactttatttcttcaATCATCTGAACatcaaaagcttaaaaaaaaaagaaacaaaaaaaaagcaaacctaTGGTTCCTAGCGTGCTCTACCCCCACCCCAACCCACCACCCACCTCTCTATAGTCTTCTGTGTTTGTAATTACAGTCAGCTGTTAATGCTACCGGAATGCCATTCCTGTCTGTTTAACTATGaacctataatatatataaatatatctatctAAATGTCTGTCTGCTGCTTGAATACCTTTCTGTATTCTACCGTGATAACCTTCCTTTAAAGCTTAGCGCTTCATgttatgcttttattttataacgCAGATATTTATAtggctgtttatttgtttatgttattGTTTACTAATGGAACACTTACATTTCAAATAAAAGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236690 lncRNA upstream 156167 10675716 ~ 10676001 (+) True G174813
TU236689 lncRNA upstream 160997 10670898 ~ 10671171 (+) True G174812
TU236688 lncRNA upstream 164988 10666950 ~ 10667180 (+) True G174811
TU236687 lncRNA upstream 166740 10665077 ~ 10665428 (+) True G174810
TU236686 lncRNA upstream 168674 10661290 ~ 10663494 (+) True G174809
TU236899 lncRNA downstream 68301 11087719 ~ 11088839 (+) True G174930
XR_002651422.1 lncRNA downstream 74299 11093717 ~ 11095900 (+) True LOC103022678
TU236916 lncRNA downstream 118131 11137549 ~ 11137957 (+) True G174944
TU236938 lncRNA downstream 171063 11190481 ~ 11265122 (+) True G174964
TU236962 lncRNA downstream 381975 11401393 ~ 11401613 (+) True G174983
XM_022681536.1 mRNA upstream 2119 10826422 ~ 10830049 (+) True LOC111195105
XM_022681535.1 mRNA upstream 5916 10821523 ~ 10826252 (+) True LOC103021388
XM_007237782.3 mRNA upstream 14775 10780796 ~ 10817393 (+) True LOC103026865
XM_022681534.1 mRNA upstream 73766 10756715 ~ 10758402 (+) True LOC103029876
XM_022681046.1 mRNA upstream 84016 10745542 ~ 10748152 (+) True LOC111195027
XM_007231161.3 mRNA downstream 62474 11081892 ~ 11084647 (+) True LOC103022370
XM_022681052.1 mRNA downstream 94397 11113815 ~ 11125744 (+) True LOC103029829
XM_015608815.2 mRNA downstream 94397 11113815 ~ 11125744 (+) False LOC103029829
XM_007231185.2 mRNA downstream 135532 11154950 ~ 11158188 (+) True LOC103030157
XM_007231166.3 mRNA downstream 230957 11250375 ~ 11322335 (+) True LOC103024145
TU236173 other upstream 2279559 8548953 ~ 8552609 (+) False LOC103038455
TU235953 other upstream 2906728 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 4291036 6537324 ~ 6541132 (+) False LOC103041160
TU234946 other upstream 5648391 5183491 ~ 5183777 (+) True G173501
TU234827 other upstream 5928523 4836714 ~ 4903645 (+) False ptbp3
TU236978 other downstream 410453 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 889454 11908872 ~ 11913456 (+) True G175108
TU237152 other downstream 889454 11908872 ~ 11913456 (+) False G175108
TU237153 other downstream 889454 11908872 ~ 11913456 (+) False G175108
TU237301 other downstream 1171972 12191390 ~ 12192751 (+) False LOC103027177

Expression Profile