RNA id: TU236916


Basic Information

Item Value
RNA id TU236916
length 409
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G174944
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 11137549 ~ 11137957 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cgcagtacttcaggtgagaacgaggggtgttgctggcggaatatgaaataaaatagcgcgtgcatcgcgtggggggacaaaaactttacagtgtgtcccaatttaggggctgcatccttcagaggctgtattcgaagacagattgcgtcacagctgcgcagtaatacaccgcctctgtgggtcgcatccttcagagtatgctgcctgtgaattgggacacaccccgacacgagctgactctggaaaggaaatatgcacgtgaggcgcaatattttgacggcacccccgatgaagccagacggcaccccagggtgccgcggcaccctggttgagaaacactgcattaGGCGCACCAGAATATACCACGCACTGTAGTCATGCAAGACTGTCAAGAATTGACTCAGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651422.1 lncRNA upstream 41649 11093717 ~ 11095900 (+) True LOC103022678
TU236899 lncRNA upstream 48710 11087719 ~ 11088839 (+) True G174930
TU236795 lncRNA upstream 118131 10832168 ~ 11019418 (+) True G174874
TU236690 lncRNA upstream 461548 10675716 ~ 10676001 (+) True G174813
TU236689 lncRNA upstream 466378 10670898 ~ 10671171 (+) True G174812
TU236938 lncRNA downstream 52524 11190481 ~ 11265122 (+) True G174964
TU236962 lncRNA downstream 263436 11401393 ~ 11401613 (+) True G174983
TU236965 lncRNA downstream 272140 11410097 ~ 11416593 (+) True G174986
TU236966 lncRNA downstream 272140 11410097 ~ 11416593 (+) False G174986
TU236982 lncRNA downstream 301184 11439141 ~ 11439725 (+) True G174997
XM_022681052.1 mRNA upstream 11805 11113815 ~ 11125744 (+) True LOC103029829
XM_015608815.2 mRNA upstream 11805 11113815 ~ 11125744 (+) False LOC103029829
XM_007231161.3 mRNA upstream 52902 11081892 ~ 11084647 (+) True LOC103022370
XM_022681048.1 mRNA upstream 118117 10925074 ~ 11019432 (+) True LOC103029503
XM_022681049.1 mRNA upstream 134652 10999496 ~ 11002897 (+) True LOC111195029
XM_007231185.2 mRNA downstream 16993 11154950 ~ 11158188 (+) True LOC103030157
XM_007231166.3 mRNA downstream 112418 11250375 ~ 11322335 (+) True LOC103024145
XM_007231167.3 mRNA downstream 159312 11297269 ~ 11322335 (+) False LOC103024145
XM_022681054.1 mRNA downstream 186931 11324888 ~ 11334033 (+) True LOC103023833
XM_022681055.1 mRNA downstream 187290 11325247 ~ 11334033 (+) False LOC103023833
TU236775 other upstream 118131 10832168 ~ 11019418 (+) False G174874
TU236802 other upstream 118131 10832168 ~ 11019418 (+) False G174874
TU236173 other upstream 2584940 8548953 ~ 8552609 (+) False LOC103038455
TU235953 other upstream 3212109 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 4596417 6537324 ~ 6541132 (+) False LOC103041160
TU236978 other downstream 291914 11429871 ~ 11436530 (+) True G174994
TU237151 other downstream 770915 11908872 ~ 11913456 (+) True G175108
TU237152 other downstream 770915 11908872 ~ 11913456 (+) False G175108
TU237153 other downstream 770915 11908872 ~ 11913456 (+) False G175108
TU237301 other downstream 1053433 12191390 ~ 12192751 (+) False LOC103027177

Expression Profile