RNA id: TU236978


Basic Information

Item Value
RNA id TU236978
length 1355
RNA type TUCP
GC content 0.42
exon number 2
gene id G174994
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 11429871 ~ 11436530 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaggaggaggaggaggctgcTCCGAGGAACGGCGGAAAACCGCAGAGGCAGAGAGATGCTTCCGTTACCGGATTGTACGATACAGCGGACATGCCTGAGCTCCTGCCCCCCTGCAGTCCCTTCAGATCAAAAGACAGAGACCCTCGCCTaatgcagaacacacacatcCTCACAGAGACGGGCATGGACCGCCTCAGTCTCAGTGACCAGCCCGAGTGTCCGCAACACAGGACCAGCCAGAGGGCACCAAAGCTCGGGCAGATCGGGCGGTCCAAGAGAGTGGTGATCGAGGACGAGGACCTGGACGACGTGCTGAACAACAACGAAGAGCTGCCGGTTACCctgaaccacagtccagcctGAGGAGCAGCGCACCTGCATCCAATTTCGCCCTACTCTGGCTCTCTCTCGCTGCTGCGCATGCGCAATCACCTGTAACGCGTCAGTCCATCACCTGTAGTTTAGTGGCAGTTTCGCGCGCTAAGGTGGAGGTGTGCTCAGGTGGGGCTTGGTGGGCGGAGCCACAGTTACGTAAAAAGCTGATTTAAGATGATAGGCCAATGTTGAAAGAAAATAACAGCAATGTATCGGAATGAGATTTATAGCGATATATGTAGAGTTGGGGgtttaaagcatttttgttttgtgtctttatgtttttattgatttatgatGAGTATTActcttattatatttatttgtcaaTATGAAtatcataattattattgttttgttttttttgtccgaTAAAATTTTTATTGTTGCTAATTCTGACTGCACTATTCACCAGAGGTTTGCATTCTTCTGATTTTATGccttattattactattattaataataacaatgttaaTATTCCCTTAGATCAACGAGAGACCATTGAGACCACTGTAAATCgttatgcatgtgtgtttgcaGTGCAGTTCTCCTTTAAACGTGTTCATATGTTTACTTTGTTGGATTGagagttgattttttttgttgtctatGTTTGCAGCAGTTATTCATGATGATTAGACaatttatttacacacataatgtcaaaataaatacatataaacataattatatTATGATAAAGCGAGGTTAAATAGAACAAAAGCACATACGTTCACAGGGAACACAGTCACACAGACTATATctccagctgtgtgtgtttttttttttaatgctgtgtttcttaattttcagtattttttttttttttttcattttatttgtagtGTGTTGTTACTTATATTGACCGCAAGGTGGAGACAAATCCAAAGGATAGatcctctgctgctgctgctgctgcatgtgctgctgtttatttggattttacAGCTTTGAATGCTGCTGATTAAATGTGTCACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236965 lncRNA upstream 13278 11410097 ~ 11416593 (+) True G174986
TU236966 lncRNA upstream 13278 11410097 ~ 11416593 (+) False G174986
TU236962 lncRNA upstream 28258 11401393 ~ 11401613 (+) True G174983
TU236938 lncRNA upstream 164749 11190481 ~ 11265122 (+) True G174964
TU236916 lncRNA upstream 291914 11137549 ~ 11137957 (+) True G174944
TU236982 lncRNA downstream 2611 11439141 ~ 11439725 (+) True G174997
TU236986 lncRNA downstream 5822 11442352 ~ 11460006 (+) True G174998
TU236993 lncRNA downstream 60418 11496948 ~ 11503865 (+) True G175004
TU237088 lncRNA downstream 162491 11599021 ~ 11599233 (+) True G175065
TU237091 lncRNA downstream 201724 11638254 ~ 11638491 (+) True G175068
XM_022681054.1 mRNA upstream 95838 11324888 ~ 11334033 (+) True LOC103023833
XM_022681055.1 mRNA upstream 95838 11325247 ~ 11334033 (+) False LOC103023833
XM_007231166.3 mRNA upstream 107536 11250375 ~ 11322335 (+) True LOC103024145
XM_007231167.3 mRNA upstream 107536 11297269 ~ 11322335 (+) False LOC103024145
XM_007231185.2 mRNA upstream 271683 11154950 ~ 11158188 (+) True LOC103030157
XM_007231175.3 mRNA downstream 313683 11750213 ~ 11865916 (+) True LOC103027020
XM_022681061.1 mRNA downstream 499130 11935660 ~ 11939097 (+) True LOC111195033
XM_015603867.2 mRNA downstream 551639 11988169 ~ 11993224 (+) True LOC107197312
XM_022681537.1 mRNA downstream 654098 12090628 ~ 12095289 (+) True LOC111195107
XM_007241259.3 mRNA downstream 707521 12144051 ~ 12151050 (+) True cnih2
TU236775 other upstream 410453 10832168 ~ 11019418 (+) False G174874
TU236802 other upstream 410453 10832168 ~ 11019418 (+) False G174874
TU236173 other upstream 2877262 8548953 ~ 8552609 (+) False LOC103038455
TU235953 other upstream 3504431 7904595 ~ 7925440 (+) True G174259
TU235446 other upstream 4888739 6537324 ~ 6541132 (+) False LOC103041160
TU237151 other downstream 472342 11908872 ~ 11913456 (+) True G175108
TU237152 other downstream 472342 11908872 ~ 11913456 (+) False G175108
TU237153 other downstream 472342 11908872 ~ 11913456 (+) False G175108
TU237301 other downstream 754860 12191390 ~ 12192751 (+) False LOC103027177
TU237308 other downstream 754860 12191390 ~ 12209449 (+) True LOC103027177

Expression Profile