RNA id: TU237152


Basic Information

Item Value
RNA id TU237152
length 784
RNA type TUCP
GC content 0.53
exon number 2
gene id G175108
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 11908872 ~ 11913456 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGCGGGATGGAAGAAGGGCCTATCCTGACTGATCACATGGTAACGAATGGAATGGATAGTCACAATGAGAAGTTTCTCCGGAAGTGCACTTGCGGGTGGCAGAAGGTAACATCACTCAGAGGGTTGCATATCCATCAGGGGAAGATGAAGTGTGGGAGGATAGCCAATCAGCACGACCGCGCTGCTGCGGCAGGTCAGACGGCAGGGACCGGAAGCCAGGTTTCAAACCACAGTGCAGCAGGACCCAGTAGTGCTGAACAGGCAACCTCAGCAGAAGTATTGGAAAGCAGGGAGGCAACCCCTGAGAGCACATTTCAGGCTGCACCTCCTCCTTTGGGGGTAGCACAACCAGCAAGCCAGCGCAAGCAACTGGGAAGGCGCAATAAGATCAAATGGCCGAAAAGTAAAAGCCAGGAGGAATGGCGTAGCCTCGATGATCATCTGAGCGTAGTGCTGGAGCACTCCTTGCGAGGTACAGTGGAGCACAAACTAGCCTCGCTGAGCAACATCATATACGAAGAATGTCGAGAGAGATTTGGGGAATGTGCAGAAAAAAGAGCCCCTGCCCCAAGACAGaaaggaagaagagagagaggtattgAGGAGCTTATAGCCAATAGGCGCGAACTGCGTAAGAGGTGGAGGAAAGCAGCCCCAGAAGAGTGGGAAGGTCTCAAGCTACTGTGGAGCGACCTCAAGCAGAGGCTCGGAAAGCTGCGCCGGGCAGAACGAATTAGGAAGCGGAGGCAACggaaggagaaagaaaggagagactTCTATAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237123 lncRNA upstream 7325 11890741 ~ 11901547 (+) True G175085
TU237106 lncRNA upstream 176859 11668901 ~ 11732013 (+) True G175083
TU237096 lncRNA upstream 264424 11644141 ~ 11644448 (+) True G175073
TU237091 lncRNA upstream 270381 11638254 ~ 11638491 (+) True G175068
TU237088 lncRNA upstream 309639 11599021 ~ 11599233 (+) True G175065
TU237210 lncRNA downstream 31941 11945397 ~ 11945895 (+) True G175157
TU237213 lncRNA downstream 35352 11948808 ~ 11949769 (+) True G175160
TU237223 lncRNA downstream 69807 11983263 ~ 12037811 (+) True G175169
TU237257 lncRNA downstream 151822 12065278 ~ 12069322 (+) True G175201
XR_002651428.1 lncRNA downstream 273787 12187243 ~ 12189381 (+) True LOC111195036
XM_007231175.3 mRNA upstream 42956 11750213 ~ 11865916 (+) True LOC103027020
XM_022681054.1 mRNA upstream 574839 11324888 ~ 11334033 (+) True LOC103023833
XM_022681055.1 mRNA upstream 574839 11325247 ~ 11334033 (+) False LOC103023833
XM_007231166.3 mRNA upstream 586537 11250375 ~ 11322335 (+) True LOC103024145
XM_022681061.1 mRNA downstream 22204 11935660 ~ 11939097 (+) True LOC111195033
XM_015603867.2 mRNA downstream 74713 11988169 ~ 11993224 (+) True LOC107197312
XM_022681537.1 mRNA downstream 177172 12090628 ~ 12095289 (+) True LOC111195107
XM_007241259.3 mRNA downstream 230595 12144051 ~ 12151050 (+) True cnih2
XM_007242409.3 mRNA downstream 277900 12191356 ~ 12192787 (+) False LOC103027177
TU236978 other upstream 472342 11429871 ~ 11436530 (+) True G174994
TU236775 other upstream 889454 10832168 ~ 11019418 (+) False G174874
TU236802 other upstream 889454 10832168 ~ 11019418 (+) False G174874
TU236173 other upstream 3356263 8548953 ~ 8552609 (+) False LOC103038455
TU235953 other upstream 3983432 7904595 ~ 7925440 (+) True G174259
TU237301 other downstream 277934 12191390 ~ 12192751 (+) False LOC103027177
TU237308 other downstream 277934 12191390 ~ 12209449 (+) True LOC103027177
TU237508 other downstream 826047 12739503 ~ 12745053 (+) True G175379
TU238049 other downstream 1407328 13320784 ~ 13327641 (+) False LOC103028411
TU238092 other downstream 1475870 13389326 ~ 13418416 (+) True LOC111195048