RNA id: TU237308


Basic Information

Item Value
RNA id TU237308
length 6112
RNA type TUCP
GC content 0.37
exon number 5
gene id LOC103027177
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12191356 ~ 12209449 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCACCGTAACACCGGGAAACGGGTGGAAAAAGCATCGCTGATGTTAATGGTGTAAACACAGTGTTCACCATGAGCGCCATGAGGACAATTCTGACCAGTATAGCGGCGATTGCGGCAGTGTGCTCTGGGCTGGGGATGTGGAAGGCCGTCGCCCCTGGAGAGGAgcgaaaaaaagaaatactgaagCAACTACCCGAGTCCAATCCGGCGCGGATGGAGGAGAGCAGGAACAGGAATGCTCTAATGATGCAGGTCCTGAAGGATGCTGCAGACACCAACGACAACCTTGCTCGAGGTTACAGGAGCCAGAAGTAAAGAGAGTTTTTCCCCTAATACAAGAGATTCACCTCTGAGGAGCCTTAATGTGCAGAAGAGCTTATGGACATCAGTTGATCCTAAGATTTCACGTTCTGCTCATATTCAGTCTGGAAAAGAACTATGATGCTAGACTTGTTAAAATATCTGTAAAGTAAAATGgatgtaaatataatgtaattaaatcaCCCATTGTATGAAATGCTTGTATTTATGACTGTTGAATGGAATGTTGGTGAAGCctgtacattatatattaaacaaCATCATCAAGTAAATCCATTACTGTTTTATAAACTTCACAAGTAcatgtattaatgtatattttaacaaGCATTTATAAAGCTAAGCGTAAGTCGTTAAAGTAATTCAGGTAAGTTAagggtgtttatttatttggataaataaagtgtttatcGGATTTATTGTactcaattattattatacaaactGTGCTGAGTGCTGATTCTCTCTGCGCAAATTGTGCGCAGTGCTGGCGTCCTCTGCGCGCGACGGAGAAAAACAGTTCCTGTGGCTTGAGGTCAACGTGACTTTTAGAAAAGCGAGACAAATCCACTTcaaatataaacagaaatcGGAGTTAATGTTAATTATGATATAATAAACAATCCTCCGTCAGAAAAAAGGTTCCGGATTCTGCAGAACTTAAGCGCGGTGAGAAAGAAGGAGAGGCCAGTTTATCAGAATCACTGAGTGAGAAAGCCATCAAGAGGAACTGAACTGAGAGCAGTGAGCAATTACAGCCCCTCAATCATTTGTGTACCAGGCAGCTCGCAGGACACTACGACAGGGTGGCCCAACATCAATGGGCACAGTGGCTCAAATTGTCTTTGCTTCAGGTTTGGCTGCGTGGGGTCTGGTAGTCATCACCGATCCGGTGGGAAAAGCCACAAAACAAAGCAAGGAAACCTGAAGGAAGTGTAATTTTAAGGACCATGAAAGAAACAGTAAAGTCATGAAGTCATAATTTGAATGGCTATCTTGCTGTTAAAGAAGTTCATCTGTGAATCCCAGGCAGTGAAGTGAGTTATTCTATACATAGAAAGTTGGAATGACTTTGACAGAAAGGTTGTACTAAATCTTTATATtaaataggtagatagaaatATGTGAAATTGGGAATTTGAGTTCAGACCTCTTAAGTACGAGTGAGAgaagtaagagtgagagagttcaGCATGTTCAGGAGGGCTTCTGCATTGAAAGAAGGAAAAGATAAAGGTATCATTATTAACTATGGTCCGGATGCAGTCCATGTGCTTGTGTAGAACATAATGtgacaaatttaaaaataaataaattaatattcttAGAATGTTTTTGATTTGGAGGAGTGTACTGAATTCATACCTGCCAGAATTCATGTTTAAATTTACTCTGTCCATCTTATAGTGAGAAATCATTTCTTGGGTGTCTTGTTTTCTGTTCACAAGCGCAGTGtgtatactttaaaatgatcagttcttctggttttactatttttaggtatatattcaagtaaaattaacattgtggttttattctataaaccactgacATTTCCCCGatggtcaaaataataaaaaaggtacaGTGCTTTCaaacttaaataatgcaaacaaaacaagttcatattcatttagaaataacaatgctaatgttttaagagataagaaatcaatatttggtttcaTGCATCTCATCATTTAATGCATACTGTCCACAATTcttttacactgcttttgggtgaccttattccactcctggcaaaaaaaaaatcaagcggttcagctttgtttgatggcttgtgtccAATCTATTAGAGGCAGGACTCTTTATTGAAAAGCAGAGAAAAGCCAGGCTAAAGTTTGCAAAAGATCATAAGAATTGATCTATAGAGGACTGGAGCAAGGTCATTTTCTTTGATGAGTCAAATTTTCAGTATGCCCAATATCTGGCCATCAAATGTTAGAGACCTGCAAAAGTATACAAGACTAAGTGTCTTGCACCCACTGTGAAATTTGGTGAAGGATTggtgatgatctggggatgcAAGGCTGGAATTGGGCAGTTTGGTCTTTGCGAATGACGCACGAATCAAGTCACATACAAGGTTATGCTGAAAGAAAACTTGCTTACTTCTGCTCTGCAAATGTTCCCCAACTCTGAGGACagtttttttccagcaggacaatgctcagtTCCACACAGCTATATCAATTAAGATGTGGATGAGGGACCACTAGGTCAAGACAGCGTCATGGCCAGCACAATCTCCAGCCCTGAACTCCactgaaaacttctggaatgtaatcaagaagTAGACAGATGGTCAAAAGCCATAAACAAAGTTGAAATACTTGAATGTTTGAGCCAGGAGGGGAGTACGGtcacaaaataaatgtgaaagactggtggagagcatgctgaaacacatgaaagctgtgataaaAAATCTGGGTTATTCTATCAGTTATTAATTCTAAACTCTTTCTTAGATAAATTTTAGTATTGtggttgtttctaaatgaatatgaactttctttgcattatttgaggtttgaaagctctgcatcttttttgttaatttgaccattttatcattttctccaaaaaaaatgctctaaatgtcgtgagtagtttaaagaataaaaccacaatgttcattttactcaaaaatatatagatatatagatcaggggtatttaattagaattcagtatggtccagttagagcAAATTCTGTCAGGCCAAGTGATTTTTGATTGTGTTGtgattcagtgctatatcctgtatacTGTAGAAgcctagtagttctgtcagttaCAAATACTATTAAGtgtatttaacaatatttattgttttaaataggcctgtcacaattaccaaccaaccaacaataACATTACCAAGTTATCAAACAAAAAATTTCCCTTATTAAGTCTATTAATATGAAtcaaaatgcaatattttttcaatttgattttatttatattagatttaggcctgcctgtcatgataattacataaattacaaatcatacaatatatggaaaaaagttttattttatttaatattattactgttagtagaaaaatgtagtatttttttctggtgcACACCATCTGAAATAGCCTTTCTCGTTTTATTTTCCGACTTCTGGTTCTTACTGCCTACTTCCCCTGTGCATAATCCGCGCTCTGAATCTGCAccgatctgattggcagaggaaagcgtttggtgatcttacaacacaggtgattggtctgtgagtttactgagCCAAAGCAGGTACAAccataaagacaagaaaagttctgctgctttaaataaacattgtcagaattaaatccttctaaGTAGTTCATCGGTTTGGGtctgcattggacaacgtttgggtctgcctattagtgacctctgctgTAGATAGTTagatcagagaaacagaagagaaaCGGAATATTTTGTggtcttacatttttttccacacaatatataaatgaaacacaaaatagacaCAAATATCACAAgtaataacttaataattaataatttaataaattaagttaaattatttaaacttaagattttttgtaaatattaatatagggcattaattaatcaataataaaggcataaacattggctttatgttgtgcatcttagcttctcAACAGCAAAGACGGCAGATCTGCCAATGTACGATAAGCTCTCTGCAATCAAGTCAGTGGATTCTCCTTCTTGTATGTTTCCGGAAATACCTGcggtataatgttttttttttttttaatttacattttacactacTCAGATCTAATTTATTGACATAACTAAGACGATATGATATAATACAGTAAGTTCCTGACCGTGCATTACGGACAGAGtaactttaacatgtatttatttatgaagtCCACATCATTGTGTTTACTGATTATATAAAGCCTGCATTAAGTCTAGAACTTGTCTCCGTTGTAGTAAACTAAccacacttattattattacagtattaataataatcagtgcTCCACAGTGCGGTCATTATGTTAAGGTAAACTAATGGAAATCTCTTTGATTtgttataagttaaatttacctgcTCACCGCTCCAAAAACCTCCGCCTCCTCTACCTTCTTCATGGGCGCGAATGACGTAAGGCTAAGCACgctatttcacattaaaagtccgCGCTAAATTCCGTGCtctgtgttttaaaattaattaaacaattcctcgaggcacagaaaatcaATCGgtcaatttttttaatcgagtaactcgaattacactctcatactggtcactgaaagttccaacattgcacctcatggcaaataaCTCTATCAGGATCTTAAAAGATGAATTGTTGCGCTACATGAAGGTGGCCAAGCTAAAAGAAGATTGCCAACACCTTAAAACTGAGCTGCAGCTCAGTGGCCAAGATCACCCAGCGTTATAAAAGAGCAGGGTACACTAAGAACAGACCTCCAAAGAAGCTGAGTGCATGTGCTCAGCGTCACATTCAAATGCTGTCTTTGACAGATAGGAGCAggagtgctgccagcattgctgcagagattgaAGAGGTGGGGGGTCAGCCTGTCACTGTTTAGACCATGAACCGCACACTACATCAAATTGATCTGCATGGCTGTCACCCAGAAGGCTTATGTCTGCATATACATAAGCATATATGTTGGCAATCAGGTGAAGAGTACAATTATAAGTGTGTCatgcctacagtcaagcatggtggtgggaatgccatggtctggggctgcatgaGTGCAGCAGGTGTTGGGGAATTACATTTCATTGAGGGAAATATGAACTACAATATGTACTGTGAAAAACTAAAGCAGAGGATGATCCCAGTGTTTCAGCAtgataatgaccccaaacacacctctaagacaaccactgctttattgaagaggctgagggtaaaggtgatggactggccaagcatgtctccagacctaaacacaatagaaaatctttggggcatcctcaagcagAAGGTGGAGGAGCACAGAGTCTGGAATATCCTCCAGCTCCGTGATGCTGTCATGAAGGAGTGAAAAAGcattccagtggcaacctgtAAAGATTTGGTAAACTCCATGCACAGGCagttctggaaaataatggtggcctCACAAAATACTCctcacttttgttgctggtggtttagacattaatggctgtatattgagttattttgagggaagaataaatttacactgttatataagctgcatacagactacttttcattgtgtcaaagtgtaattttgtcagtgttgtcctaTGAATAgataaatatctgcagaaatgtgaggggtgtactcacttttgtgatacattGATACATTGAGATACAAGTTCTCCTACTTGATGAGAAAGGTCTGTACATTTTCATCATAGATACACTTCAATTatgagagacaaaatgagaaaaagaaatcTGGGAAATCAAATTCTAAAATGTTTGCTGAATTTATGTGTAAATTATGGTTGAAGATAAGTATTTGattaataacaaaagtttaacTTGATGCTTCGTATCATAACCCCTTTGTAGGACAGAACAGCTTCTTAAAGAAGAAGTTACAGGTCTGTCAGTGCCAGATGTCttgcttgtttgtgtgtgacCAAATACTTTTTTCCACTATACtttccaaataaatgtttttttccctcatttTGTCTCTCATAATTGAAGTGTACCTATGATGAAAATTCATCAGTAGATATTTTATTGCCCCACTATAtaaagtggcttgcaaaagttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651428.1 lncRNA upstream 2009 12187243 ~ 12189381 (+) True LOC111195036
XR_002651429.1 lncRNA upstream 2009 12187243 ~ 12189381 (+) False LOC111195036
TU237257 lncRNA upstream 122068 12065278 ~ 12069322 (+) True G175201
TU237223 lncRNA upstream 153579 11983263 ~ 12037811 (+) True G175169
TU237213 lncRNA upstream 241621 11948808 ~ 11949769 (+) True G175160
XR_002651432.1 lncRNA downstream 5251 12214700 ~ 12217838 (+) True LOC111195040
TU237319 lncRNA downstream 9797 12219246 ~ 12219689 (+) True G175237
TU237332 lncRNA downstream 47145 12256594 ~ 12259326 (+) False G175249
TU237331 lncRNA downstream 49539 12258988 ~ 12260820 (+) True G175249
TU237333 lncRNA downstream 87343 12296792 ~ 12297319 (+) True G175250
XM_007241259.3 mRNA upstream 40340 12144051 ~ 12151050 (+) True cnih2
XM_022681537.1 mRNA upstream 96101 12090628 ~ 12095289 (+) True LOC111195107
XM_015603867.2 mRNA upstream 198166 11988169 ~ 11993224 (+) True LOC107197312
XM_022681061.1 mRNA upstream 252293 11935660 ~ 11939097 (+) True LOC111195033
XM_007231175.3 mRNA upstream 325474 11750213 ~ 11865916 (+) True LOC103027020
XM_022681538.1 mRNA downstream 105283 12314732 ~ 12316734 (+) True LOC111195108
XM_007238996.3 mRNA downstream 314692 12524141 ~ 12540201 (+) False rnft1
XM_015602943.2 mRNA downstream 314692 12524141 ~ 12540201 (+) False rnft1
XM_007238997.3 mRNA downstream 314692 12524141 ~ 12539574 (+) False rnft1
XM_022681073.1 mRNA downstream 464429 12673878 ~ 12692133 (+) True ptrh2
TU237151 other upstream 277934 11908872 ~ 11913456 (+) True G175108
TU237152 other upstream 277934 11908872 ~ 11913456 (+) False G175108
TU237153 other upstream 277934 11908872 ~ 11913456 (+) False G175108
TU236978 other upstream 754860 11429871 ~ 11436530 (+) True G174994
TU236802 other upstream 1171972 10832168 ~ 11019418 (+) False G174874
TU237508 other downstream 530054 12739503 ~ 12745053 (+) True G175379
TU238049 other downstream 1111335 13320784 ~ 13327641 (+) False LOC103028411
TU238092 other downstream 1179877 13389326 ~ 13418416 (+) True LOC111195048
TU238094 other downstream 1201661 13411110 ~ 13418416 (+) False LOC111195048
TU238204 other downstream 1469910 13679359 ~ 13685563 (+) True G175900

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU147037 True 536 lncRNA 0.49 3 CI01000026 3502312 ~ 3503106 (-)
grasscarp (Ctenopharyngodon idella) TU481280 True 581 TUCP 0.50 2 CI01000304 2092494 ~ 2093678 (+)
rainbow trout (Oncorhynchus mykiss) TU481280 True 205 lncRNA 0.49 1 NC_048569.1 62282172 ~ 62282376 (-)
rainbow trout (Oncorhynchus mykiss) TU624400 True 526 lncRNA 0.50 1 NC_048570.1 81656971 ~ 81657496 (+)
eurasian perch (Perca fluviatilis) TU147037 True 781 lncRNA 0.38 1 NC_053121.1 34996839 ~ 34997619 (+)