RNA id: TU237430


Basic Information

Item Value
RNA id TU237430
length 2546
lncRNA type sense_over
GC content 0.36
exon number 2
gene id rnft1
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12524141 ~ 12540201 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcggctgttctaacctgctgctgttagctgcttgggctgaaagatgaactgtagtgagctgtattatccggttagtggggttaaaacctttatttgtttacagaaacagtaaaaacggactggctgggctctgtagcccgtggctgggctgtactgaagtagtgactgagtgaagagagcggggcttgtgctgctgctgctagtggttggatgaagaactgcagcttcatgtaatgagcagtttcaccagccatccacacacagctctgataaactgcttgttttaatagtgcacactgttgctaccaaaaaaagtcactagatggcattaccatatatatcttaataaataataataataatatttataataataataataataataataataataataataaatatattatttaaattttatgaggcataaaataataacaagaaaaaaaaacaagaaaatcgagaatcgaatcgaatcgtgaccctcaaatcgaaaatgaaatcgaatcgaggatttagagaatcgtgacacccctacagGACACACAtgaaattacgtagtaaacaaaaaaagtgttagtcttccacaatcccctgacctaaacccaactaagatggtgatttgggatgagctggatctttacagtgtgaagaaaaagcagcaactattgttcagcactttCAGGATCTCTTTCAAGACGCTAAGAAACCTATTCCAGGTGtctcataaagacactgagattaaaataccaagaatgTGCAGATATGTCCTTAACGACAAGTGTGGtgtttagaagaatctaaagtataaaatatattctggtttatcactttttgtttacaaaataattgtgtgtgtatttaattataaatttacaatgtagaaattaTAAAAAGAACTCTAGGACCAGGATTTGAGACCTGTATTCTAAAGTAATATTCTGGTGTGTTTAATTGCTCTGTTAATGCAGGTATAAGCTTTGTCTGCACCTAATCTTTATTTATAACGTttgtcatctttttttttcggATTATCAACATGAGGATCAGAACTGTGTGTCAACTATTATAAACCTAAAACAGCAGGAAACAGTCTTAGCCTTACCAAAATCTAATGTCAATGACGACTGTCCACAGTAGGCTTTAAGGTCAGAATGATGGAGACTACAGTAGAATAAGCAAACCAAAGCCAGTTAGtttcacaaaaaatgtgtaaacTAATTGTACTAATTTGATTAGTTGAGTGACACACATACACGAGCACCAACGTACGTAGAATGGCAATGGCTAAGATAAAATGCGACCTCTCTTGTCTGCAATTGTGGACAAAACAGCTCATGGAGTAAAGTGTGGGCATATTTTGCTTATATCTTTGATGAAGACAGGAACCAAACCAACACAACTAACCCATTTtacaaacagtgtttaaaatctCTCTAGTGCAAAGGAAGGAACACGAGCAACTTGGCTCAGCATTTGGTAAAGAAGCACCTTTACTGAGCTGAGAAGTTGTgagcACATTTTCTGTGAGGAGTGCATCACACAGTGGTTCAATCTGGAAAAGACTTGCCCTCTATGTCGCACCATCATTACAGATAAGGTCCACAAGTGGAAAGATGGGGCAACCTCACCTTACCTGCAACTCTACTGACAGCATACCTCCTTACTTACACAGCTCTGGGATAACCGGCATCTTACTTATAGCAAACAGCACAACAGACATGCATTCTTAAGACCCTTTCATTGATAAATAGGTCTTACTTTAACCGCTTTACCGGCCCTGCTGTCTAAAAAATGGATTCGGAACTCCAATCGCAATACTTCCTATGTTTTGGAAAGCATGTTTATAAAATGGCTGTGATTTTAAACTTGGACTGGAGAAAGCAATAGTATTTTTTTCAACAATTGATTGTAGTACTGGACCTAGCtaaattatctattttttgtaGCTGcagttttattacattacattatgacGAATCTTTTTTCCATCATATCTGGTAAATTTGCAGAGAGGATAAAGTTGTCTCCTATAGAAGAGACACCATGTCTAATAACCAACACATAGCAACTCCCCACCCAAACTGTGCACATGTTTCCTTTTTAACTTGAGTTTGTTTAGAGGTCAGTGGGAATTCCTGGAAATGTCAAGAAGTTAAACCAAATGGTCCAGGTGCCTTGCTTACATGGaatgttattattaatgctATATGTCTTTCTTACAAATAATTTGTGCTCGGAAGTTGGGAAGCTTTATGTATCGAGATACATAGATGTTTATAAATGACTGCCATCATCAGCAAATGTATGCATATCAGTTTGCAATCAAAAGCTTATTATATTAACAATTCCATTTAAGTATGATGAAATAATTTCAGAACATAGCCTgaatgtttgttatttttctagtAACTTTTCAAGTGTTGTGCATACAGCTTTTGTATTACCTACAGAAGAAACCAAAGAATCTTAAATCTATTTTCCTAAAGATTTTTGTGTGCAACAAGCTGACCCCCccagattttttcaaatcaagaataaaa

Function

GO:

id name namespace
GO:0010638 positive regulation of organelle organization biological_process
GO:1902905 positive regulation of supramolecular fiber organization biological_process
GO:0048518 positive regulation of biological process biological_process
GO:0048522 positive regulation of cellular process biological_process
GO:0051495 positive regulation of cytoskeleton organization biological_process
GO:0031334 positive regulation of protein-containing complex assembly biological_process
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0030838 positive regulation of actin filament polymerization biological_process
GO:0045010 actin nucleation biological_process
GO:0032273 positive regulation of protein polymerization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237403 lncRNA upstream 132864 12395413 ~ 12402354 (+) True G175305
TU237367 lncRNA upstream 169279 12338813 ~ 12365939 (+) True G175277
TU237379 lncRNA upstream 181732 12352600 ~ 12353486 (+) True G175288
TU237374 lncRNA upstream 187030 12347498 ~ 12348188 (+) True G175284
TU237359 lncRNA upstream 208346 12319950 ~ 12326872 (+) True G175272
TU237445 lncRNA downstream 24904 12565091 ~ 12565419 (+) True G175340
TU237461 lncRNA downstream 45744 12585931 ~ 12592035 (+) True G175348
TU237462 lncRNA downstream 47061 12587248 ~ 12588223 (+) False G175348
TU237464 lncRNA downstream 47061 12587248 ~ 12588223 (+) False G175348
TU237457 lncRNA downstream 47666 12587853 ~ 12592035 (+) False G175348
XM_022681538.1 mRNA upstream 218484 12314732 ~ 12316734 (+) True LOC111195108
XM_007242409.3 mRNA upstream 342431 12191356 ~ 12192787 (+) False LOC103027177
XM_007241259.3 mRNA upstream 384168 12144051 ~ 12151050 (+) True cnih2
XM_022681537.1 mRNA upstream 439929 12090628 ~ 12095289 (+) True LOC111195107
XM_015603867.2 mRNA upstream 541994 11988169 ~ 11993224 (+) True LOC107197312
XM_022681073.1 mRNA downstream 133691 12673878 ~ 12692133 (+) True ptrh2
XM_007235407.2 mRNA downstream 251036 12791223 ~ 12794193 (+) True LOC103039534
XM_015601931.2 mRNA downstream 255929 12796116 ~ 12809169 (+) True katnal1
XM_007235408.3 mRNA downstream 255930 12796117 ~ 12809169 (+) False katnal1
XM_015601932.2 mRNA downstream 255965 12796152 ~ 12809169 (+) False katnal1
TU237308 other upstream 325769 12191390 ~ 12209449 (+) True LOC103027177
TU237301 other upstream 342467 12191390 ~ 12192751 (+) False LOC103027177
TU237151 other upstream 621762 11908872 ~ 11913456 (+) True G175108
TU237508 other downstream 199316 12739503 ~ 12745053 (+) True G175379
TU238049 other downstream 780597 13320784 ~ 13327641 (+) False LOC103028411
TU238092 other downstream 849139 13389326 ~ 13418416 (+) True LOC111195048
TU238094 other downstream 870923 13411110 ~ 13418416 (+) False LOC111195048
TU238204 other downstream 1139172 13679359 ~ 13685563 (+) True G175900

Expression Profile