RNA id: XM_015602943.2


Basic Information

Item Value
RNA id XM_015602943.2
length 2356
RNA type mRNA
GC content 0.44
exon number 8
gene id rnft1
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12524141 ~ 12540201 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taatacgggaggacggcgggaaagaggagtaaaatacggtagtttcccggccaaaacgggagacttgacaggtatgggtaAAGCTGAGCTTTATTACGCTGGGCgaattgaaaattcatgaactATTATTTTGAAACAGCGGCGGACTGTCAGCCATGTTGGCCGCTGTGTGGATCGGATGTTTCGGATTCTTCAGCTGCTGGACAGACGGTGTTTCCGGGGGCGATTGGTTTAGAggtgtttgtgtttatctgtgaacagtatatatatatttttctcgtTGTTAATCCATTTTAAGCATCAAAGTTCTCTCGATGGAGATCAGCGGTTTGACATGAAACTCCGGCCTCAGTATGAAAGGAGAGCCTTTAACGTAAGTGAGTCCAGAAGAGGGTTAAAACCTGGGGAAACGACGGTAATGCCGACCGAACTGAACTCTCAGGATGGCAGCAGCGGTTTGTCACTAGCTTTGCAACCAGAGCACCTCAGCAGAACATCGGGGTCAGGAGCGGTTACCTCTCTGGAGCCCGGCGATGTCCGAGTGGCTGTCGGCAGCTCTGCGGCAGAGAGCAGTGGTGTACCAGCTTCACGGAGACCACGGTCCGGAGCTCACAGCCACGCTCACACTCATTCTCACGGCTCCGGGAGAGTTTACACACAGCCGTACCCCGAGGCGGAGCAGTCGGGCCACGAGCCGGACACAGGCGAGTCCAGCGCCTCATTCTCAGAGCTCCGCTACCTGTTCCGCTGGCTGCAAAAAAGTCTTCCTTTCATCGTGATTCTCAGTGCAAAACTCGTTATCCAGCACGCACTAGGGCTGGCTGTCGGAGTTGGTCTGTTTACGACTTTTCTTTATGTGAATAAAAACATTCAGACACAAGTTTTTCTGCAGGACCGACAGTCAAAGCTACAGTGTCTCTGGCTTCTCTCCTTCCTGATAGCCTCCTCCCTGCTTTTCTACTACGCATTTCAGGCGGAGTCACTTTACTATTGCCTCATCCTCGTCAACCCCCAAGTTGAACAGCTGGATTTCTGGGAGGTTTTGTGGGCTGTTGGAGTTACCAGTTTTACTGTAAAGTTTGTCTTCATGGGATTCAAGTgccttattcttcttcttccctCCCCTGTTATGGTACACAGAAGACGGCTTTTGGGACTTTATGGTCAGTGGGGATCTCTGAAGAAAACAGTCCGAACCTTTCTCAGTTGTGAGGTAAATGGGGGCCCTGCCACTCTGTCTCAGTGCACAGAGGCTGGAGATACCTGCCCTATCTGTCAGTCTGACTTTAAGCAGCCTCGGGTCCTCCTGTGTCAAcACATTTTCTGTGAGGAGTGCATCACACAGTGGTTCAATCTGGAAAAGACTTGCCCTCTATGTCGCACCATCATTACAGATAAGGTCCACAAGTGGAAAGATGGGGCAACCTCACCTTACCTGCAACTCTACTGACAGCATACCTCCTTACTTACACAGCTCTGGGATAACCGGCATCTTACTTATAGCAAACAGCACAACAGACATGCATTCTTAAGACCCTTTCATTGATAAATAGGTCTTACTTTAACCGCTTTACCGGCCCTGCTGTCTAAAAAATGGATTCGGAACTCCAATCGCAATACTTCCTATGTTTTGGAAAGCATGTTTATAAAATGGCTGTGATTTTAAACTTGGACTGGAGAAAGCAATAGTATTTTTTTCAACAATTGATTGTAGTACTGGACCTAGCtaaattatctattttttgtaGCTGcagttttattacattacattatgacGAATCTTTTTTCCATCATATCTGGTAAATTTGCAGAGAGGATAAAGTTGTCTCCTATAGAAGAGACACCATGTCTAATAACCAACACATAGCAACTCCCCACCCAAACTGTGCACATGTTTCCTTTTTAACTTGAGTTTGTTTAGAGGTCAGTGGGAATTCCTGGAAATGTCAAGAAGTTAAACCAAATGGTCCAGGTGCCTTGCTTACATGGaatgttattattaatgctATATGTCTTTCTTACAAATAATTTGTGCTCGGAAGTTGGGAAGCTTTATGTATCGAGATACATAGATGTTTATAAATGACTGCCATCATCAGCAAATGTATGCATATCAGTTTGCAATCAAAAGCTTATTATATTAACAATTCCATTTAAGTATGATGAAATAATTTCAGAACATAGCCTgaatgtttgttatttttctagtAACTTTTCAAGTGTTGTGCATACAGCTTTTGTATTACCTACAGAAGAAACCAAAGAATCTTAAATCTATTTTCCTAAAGATTTTTGTGTGCAACAAGCTGACCCCCccagattttttcaaatcaagaataaaaactgtttgatttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237403 lncRNA upstream 121787 12395413 ~ 12402354 (+) True G175305
TU237367 lncRNA upstream 158202 12338813 ~ 12365939 (+) True G175277
TU237379 lncRNA upstream 170655 12352600 ~ 12353486 (+) True G175288
TU237374 lncRNA upstream 175953 12347498 ~ 12348188 (+) True G175284
TU237359 lncRNA upstream 197269 12319950 ~ 12326872 (+) True G175272
TU237445 lncRNA downstream 24890 12565091 ~ 12565419 (+) True G175340
TU237461 lncRNA downstream 45730 12585931 ~ 12592035 (+) True G175348
TU237462 lncRNA downstream 47047 12587248 ~ 12588223 (+) False G175348
TU237464 lncRNA downstream 47047 12587248 ~ 12588223 (+) False G175348
TU237457 lncRNA downstream 47652 12587853 ~ 12592035 (+) False G175348
XM_022681538.1 mRNA upstream 207407 12314732 ~ 12316734 (+) True LOC111195108
XM_007242409.3 mRNA upstream 331354 12191356 ~ 12192787 (+) False LOC103027177
XM_007241259.3 mRNA upstream 373091 12144051 ~ 12151050 (+) True cnih2
XM_022681537.1 mRNA upstream 428852 12090628 ~ 12095289 (+) True LOC111195107
XM_015603867.2 mRNA upstream 530917 11988169 ~ 11993224 (+) True LOC107197312
XM_022681073.1 mRNA downstream 133677 12673878 ~ 12692133 (+) True ptrh2
XM_007235407.2 mRNA downstream 251022 12791223 ~ 12794193 (+) True LOC103039534
XM_015601931.2 mRNA downstream 255915 12796116 ~ 12809169 (+) True katnal1
XM_007235408.3 mRNA downstream 255916 12796117 ~ 12809169 (+) False katnal1
XM_015601932.2 mRNA downstream 255951 12796152 ~ 12809169 (+) False katnal1
TU237308 other upstream 314692 12191390 ~ 12209449 (+) True LOC103027177
TU237301 other upstream 331390 12191390 ~ 12192751 (+) False LOC103027177
TU237151 other upstream 610685 11908872 ~ 11913456 (+) True G175108
TU237508 other downstream 199302 12739503 ~ 12745053 (+) True G175379
TU238049 other downstream 780583 13320784 ~ 13327641 (+) False LOC103028411
TU238092 other downstream 849125 13389326 ~ 13418416 (+) True LOC111195048
TU238094 other downstream 870909 13411110 ~ 13418416 (+) False LOC111195048
TU238204 other downstream 1139158 13679359 ~ 13685563 (+) True G175900

Expression Profile