RNA id: TU237460


Basic Information

Item Value
RNA id TU237460
length 218
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G175348
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12585931 ~ 12592035 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acacacaccacacacactacacacatacacccatctttacactacacacacacactacacacactctacacacatacacccatctttacactacacacactacacacacacacacacacacacacacccatctttacactacacacacactacacagatacacccatctttacactacacacacacatacacccatctttacactacacacaccacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237445 lncRNA upstream 22434 12565091 ~ 12565419 (+) True G175340
TU237430 lncRNA upstream 47666 12535218 ~ 12540187 (+) True rnft1
TU237403 lncRNA upstream 185499 12395413 ~ 12402354 (+) True G175305
TU237379 lncRNA upstream 234367 12352600 ~ 12353486 (+) True G175288
TU237374 lncRNA upstream 239665 12347498 ~ 12348188 (+) True G175284
TU237468 lncRNA downstream 2189 12594224 ~ 12594628 (+) True G175350
TU237469 lncRNA downstream 4603 12596638 ~ 12596837 (+) True G175351
TU237488 lncRNA downstream 41645 12633680 ~ 12635779 (+) True LOC111195043
XR_002651436.1 lncRNA downstream 41724 12633759 ~ 12635793 (+) False LOC111195043
TU237490 lncRNA downstream 67435 12659470 ~ 12660283 (+) True G175368
XM_007238996.3 mRNA upstream 47652 12524141 ~ 12540201 (+) False rnft1
XM_015602943.2 mRNA upstream 47652 12524141 ~ 12540201 (+) False rnft1
XM_007238997.3 mRNA upstream 48279 12524141 ~ 12539574 (+) False rnft1
XM_022681538.1 mRNA upstream 271119 12314732 ~ 12316734 (+) True LOC111195108
XM_007242409.3 mRNA upstream 395066 12191356 ~ 12192787 (+) False LOC103027177
XM_022681073.1 mRNA downstream 81843 12673878 ~ 12692133 (+) True ptrh2
XM_007235407.2 mRNA downstream 199188 12791223 ~ 12794193 (+) True LOC103039534
XM_015601931.2 mRNA downstream 204081 12796116 ~ 12809169 (+) True katnal1
XM_007235408.3 mRNA downstream 204082 12796117 ~ 12809169 (+) False katnal1
XM_015601932.2 mRNA downstream 204117 12796152 ~ 12809169 (+) False katnal1
TU237308 other upstream 378404 12191390 ~ 12209449 (+) True LOC103027177
TU237301 other upstream 395102 12191390 ~ 12192751 (+) False LOC103027177
TU237151 other upstream 674397 11908872 ~ 11913456 (+) True G175108
TU237508 other downstream 147468 12739503 ~ 12745053 (+) True G175379
TU238049 other downstream 728749 13320784 ~ 13327641 (+) False LOC103028411
TU238092 other downstream 797291 13389326 ~ 13418416 (+) True LOC111195048
TU238094 other downstream 819075 13411110 ~ 13418416 (+) False LOC111195048
TU238204 other downstream 1087324 13679359 ~ 13685563 (+) True G175900

Expression Profile