RNA id: TU237518


Basic Information

Item Value
RNA id TU237518
length 1266
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G175384
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12758233 ~ 12760229 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TagaaaatatgtgttttaatggAATTTATAACTTAATTGTTCTCAACGATACTttaatgtgaataaataaaacatatggtCATTGAAACACAACTGACAAACACTAGGGTAAAGTATAATCAAATATTGATCCCACGTAACAAACAGTACAATTCCTATAAAAATGTCCAAATACTTCTAATCCAATACATATAGATTATGTTATAAACACTTGATTACAAACCCTCTAAAGTGCAAAAGACTTACtgttatatttctttaaaaatatacaaggTCACAAATTTGAAAAGTGACAACTGAACtacaaaaatactttaaaaatttgGTCAGTAATCTTAGTGGTATATTCAAAAACCTCCACCTTCACAGAACCATAAACTACCAGTGCTACACTAGTAACTAATGTTGGTGGACCATGTTGGGCATGTTGACCCAGTAACCATGTTTGCTTCGGTAGCTATTCGGTACCCAGCTGTTTGGTTTAAAGGAGTGGCTGTGTCTCCCAGGAGGGTGGAAAAAATGGTTTGGCCGTGGCGGGCCATGTCCTTTCCCTGGTCCAAGCTTCTTTCTGGATACAGGATGCCACACAGGAGCACCGGGGTAGATGAACTGGTAAGGGGGACAATTATGAGTGAAACTTGGAGTGAAACAGGACTCTCTGCAGCCACTGTCCTCATCTGAAGAAGATCCTGAATGATAATCTGAGGTCACTCTCTCTACAGCACTGGTTACCTTCTTCGTCACATCCTCtttgtcatcatcatcaccctcaCTTGAAAAACTGGCAACAGTGAAGGCAAGGTTCCTCTCACCATATCTGCAGCACACCTCTCCTGGATCTACCCACAATGTGAGCTCTTTGGGAAGACCAAGGTCCTTATACTGCACACCGCTTTCAGCACAGGCTCTCAGTAGCTCTGGGTCTTCTTTAAGGAACCGGTTTACGCGAATACACTGAAAGCCTGGCCTTTGTTAGGGTTGTCTGGATACCAGTGACCTCTGAACTTTTCCTGCAGAGCCACAGTCAACCGCTCCACAAACAGATCCACTTTCTCCACATCCAGCTTCTCAGCCTTCTTGATCAACCGCTTTAAGAAAAACACCACTGCCGCAATTTCTTTCTTCATTGTTAGCAGCAGGGCTGAAAATCCGGTCCAAATTCTGTTAATGGCACAAATCGGATAATTAAAAATATCACAGCAGAATAATCTGTAATGTCTAACTAATAGTAAATTGTGTTCCAGATCCCTAAGGTAGTCATGTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237504 lncRNA upstream 19361 12732082 ~ 12738872 (+) True G175378
TU237507 lncRNA upstream 19361 12737996 ~ 12738872 (+) False G175378
TU237495 lncRNA upstream 46849 12710314 ~ 12711384 (+) True G175372
TU237478 lncRNA upstream 49455 12703614 ~ 12708778 (+) True G175356
TU237490 lncRNA upstream 97950 12659470 ~ 12660283 (+) True G175368
TU237525 lncRNA downstream 110553 12870782 ~ 12872646 (+) True G175388
TU237837 lncRNA downstream 135893 12896122 ~ 12896464 (+) True G175641
TU237840 lncRNA downstream 138650 12898879 ~ 12899168 (+) True G175644
TU237841 lncRNA downstream 139382 12899611 ~ 12900020 (+) True G175645
TU237899 lncRNA downstream 293470 13053699 ~ 13062086 (+) False G175665
XM_022681073.1 mRNA upstream 66100 12673878 ~ 12692133 (+) True ptrh2
XM_007238996.3 mRNA upstream 218032 12524141 ~ 12540201 (+) False rnft1
XM_015602943.2 mRNA upstream 218032 12524141 ~ 12540201 (+) False rnft1
XM_007238997.3 mRNA upstream 218659 12524141 ~ 12539574 (+) False rnft1
XM_022681538.1 mRNA upstream 441499 12314732 ~ 12316734 (+) True LOC111195108
XM_007235407.2 mRNA downstream 30994 12791223 ~ 12794193 (+) True LOC103039534
XM_015601931.2 mRNA downstream 35887 12796116 ~ 12809169 (+) True katnal1
XM_007235408.3 mRNA downstream 35888 12796117 ~ 12809169 (+) False katnal1
XM_015601932.2 mRNA downstream 35923 12796152 ~ 12809169 (+) False katnal1
XM_015601933.2 mRNA downstream 37042 12797271 ~ 12809169 (+) False katnal1
TU237508 other upstream 13180 12739503 ~ 12745053 (+) True G175379
TU237308 other upstream 548784 12191390 ~ 12209449 (+) True LOC103027177
TU237301 other upstream 565482 12191390 ~ 12192751 (+) False LOC103027177
TU237151 other upstream 844777 11908872 ~ 11913456 (+) True G175108
TU238049 other downstream 560555 13320784 ~ 13327641 (+) False LOC103028411
TU238092 other downstream 629097 13389326 ~ 13418416 (+) True LOC111195048
TU238094 other downstream 650881 13411110 ~ 13418416 (+) False LOC111195048
TU238204 other downstream 919130 13679359 ~ 13685563 (+) True G175900
XR_002651440.1 other downstream 1087033 13847262 ~ 13868855 (+) False prdm15

Expression Profile