RNA id: TU237721


Basic Information

Item Value
RNA id TU237721
length 2608
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G175555
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12597647 ~ 12600254 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgcatgAAAATcctttttgttacatttttacaatgtaTCTAATAAGTGCACTATTTCAGAAATTTAACAAGGTATATTTAGTATACTGTGGAACAGATACAGACTGTTGGGTAACATTTGAGGTACAGGAAATCTATCTATAGAAACAGCAAAATTAAAATGAGCAAAACTGTGAATAGCCTAAAATAACAGCAGTCGTTTGAGTAAATGGTAAAGCCCCATAGTTAGCAGAGGTAAAATCAAGTCTAAGAAAACCTGTTTAAATCCAGTTTATTCCCAACTGTTGATGGAGttaaaaaactgagaaaaacttCTTTATCAAGAGTTATAATgaagtttattttcatacattttatcTGCCAAACATTGCAAAGATGTGATTGTGTGCTTGTTTTCTAAAAAGCCAGAGGTTCTCTGTGATATGTGCTGCAGGCTAAAGATTAAGGGGGCACAAGACTTCCATGTTGTGTCTAATCTTAGTGATCTgatattttgtctttattttaatctaGTTTTCCTCTTTAATCTGCAGTAGTGCTGAGACCTCCTGTGCCAGTGCTCTCAGGggaggaacaaaaaaaaaatgtgaaaacagaTGATTACTGGAAGCACTTCCTCGCTCTATCGCTGGGAATTAGTGTCAAACCATGCATGATTTGACATTACTGTAGTAATTCTTCTGGCAGCCTTTGATCTCCTATTTAAGAGCATTTGCTAGTTAAAGGTAGAGGTTAGCTCTTTTTCCAGTCTCTCGAgatgattattgattatcataATGAAAGGATTCCTCATGTGGCCGCTGGGCCTGAATGAGATGTTTGAAccctttttttctcctgttgATGTCtgatttgtgtgtctgtgtgtatttgtaaatgtctgtgtctgttcttgtgtgtgtgctgttccCACACATATAGTTGCTTgtgtttgtaaatatataccGTTTTTGATACTAGAGTATTTCAGCTTCGTAATTTGAGTTGTTCCTGTTCATGTAAAGGCCACTGTATGAGTGCCCTGCACACTGCATCAGAATAGGCCTGCTATAATCTATGCAGGGGCATAGATTACTGCCCAAAAGGTACTTTGTAACTGAATGGCACAGGAACCATAGAGAGGGAACACTAGaggaaaaaaactgtatttccaTTAGACAAGCCCTCCTGCTGTCCAGAGGGACACCTTTAAGAAGACTGAATTATCACATTATCAGAACTAAACAAATGCAGATGACCCTCTGTTTCCTTCTGAAAGGACATTCCACAAATAGTAGTGGGGGTCAGGAAAGACCCTTAAGAATGAATGTCAATGACAGGCGAGGATGACATGCAGAGGTAATCTGACAGAACATGACTGACTGAGAGGACGAAGGGGGCGGCACGATCATGGGGGTGAAAAGAGAAGGGAAATTGGCATCACTGAAACAACCAGTTCTGAGAAGGGAGACAGAGTAATGGATACGTTTACAGCagtgttcctgttcctgtttcTAGCTAATGCGAGAAATACACGTAGAAATCAGCACACAGTGAATAACATTACCCCTAAAGGCTTTAGAAATTAAATCAATAGGTACCCTAACTAATCTGATACACAAATGTCTGCTACTTTGCAGTTCATGCCAAATTGTTAATTGGAAAATAACTGACATGCTACTGTTTTTGTTCATGTACGGCATCACAGTAATGCTGAACACGAAAACGGGTAACGTTACtcatttggacgtactttactGGCATGCCTGATTTAATCCTTTTTTCTTACTTCTGAGAAAGAGGGAATGACGTTGTATAGTGACCTAAGGAACAGTCATCCAACAAAGAGCTGCATTGAGTTTAAATGCTCTATATAAATCACGATGGAACCTCTTAACCTAACAGGTACACACAGTTAGACGATGAGGTTGGACCCAAGTATACCTCTCTGTTGTGAtttaagtgttattttattcaaaagcaTGATTAAAAGAGAAGGAAGTGAGAAAATCCCTTCATTGTTCTGGGTTGTGTGATTGTGTTGAGACTAAATGGACAAATGACAAATCAGCAGATGGGCAAATGAGTCACCCGATAAGTGGATGTTTTTTTCTCATGGGGCTGGACAGAATGACACACAAACCTATTCAGAATCTTCAAAATGGTGGCTCTGAAGATAATGTCCTTCTGGTTCATGACTCTGCTTTTCTGGTGACTTGCCTTCATGACTCAACTTTCAGCATAGAAATACCAAAAACCCAGCTAGCTAGCTGATGACTTGTTTTAGTGTTTGcctttcagagttttttttttttttcagttgcagcTGGTAGCATACTTTGTGCACTTTTTTCCAAAGCCTTAATGttttgacttctctttgtattttcaaatttgtaaagcactttgaatgactgttgtgtatgaaaggtgctatgtAAAGGAACTTACCTTGCCTTGCCTAATTGATGGAGTTAAGTGActaaatatttgcattttgaAATACGTCTTAAGTCCAGggatgtacctgatcagctgtTAAATATCTGTATGGACCAAATTAATGAAGCACATGAAACTGCCTTTCTGAAATAAGGAACTTCTGAATGGCTGGGGTGTTTGAGCAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237742 lncRNA downstream 12375 12584291 ~ 12585272 (-) True G175573
XR_453678.3 lncRNA downstream 15910 12576368 ~ 12581737 (-) True LOC103046834
TU237735 lncRNA downstream 30640 12566716 ~ 12567007 (-) True G175566
TU237619 lncRNA downstream 37653 12518023 ~ 12559994 (-) True G175476
TU237712 lncRNA downstream 72210 12524280 ~ 12525437 (-) True G175550
TU237719 lncRNA upstream 952 12601206 ~ 12605433 (-) True G175553
XR_002651433.1 lncRNA upstream 5790 12606044 ~ 12645567 (-) True LOC103047042
TU237747 lncRNA upstream 12901 12613155 ~ 12613413 (-) True G175578
TU237778 lncRNA upstream 100059 12700313 ~ 12703161 (-) True G175606
TU237794 lncRNA upstream 146534 12746788 ~ 12794710 (-) True G175611
XM_022681066.1 mRNA downstream 128965 12337212 ~ 12468682 (-) False med13
XM_022681065.1 mRNA downstream 128965 12337212 ~ 12468682 (-) True med13
XM_022681068.1 mRNA downstream 290964 12256861 ~ 12306683 (-) False ints2
XM_022681539.1 mRNA upstream 92611 12692865 ~ 12753715 (-) True LOC103039067
XM_007235403.3 mRNA upstream 157972 12758226 ~ 12761626 (-) False btg3
XM_007235402.3 mRNA upstream 157972 12758226 ~ 12761468 (-) True btg3
XM_007235405.3 mRNA upstream 163934 12764188 ~ 12768958 (-) True alox5ap
XM_015601930.2 mRNA upstream 177757 12778011 ~ 12788981 (-) False uspl1
TU237170 other downstream 665893 11827807 ~ 11931754 (-) True G175119
TU237095 other downstream 954015 11643317 ~ 11643632 (-) True G175072
TU237027 other downstream 1137629 11448577 ~ 11460018 (-) False LOC103024982
TU236303 other downstream 3951343 8642965 ~ 8646304 (-) True G174497
TU236264 other downstream 4099711 8366306 ~ 8497936 (-) True LOC103039277
TU237752 other upstream 22957 12623211 ~ 12623555 (-) True G175583
TU237844 other upstream 296786 12897040 ~ 12897521 (-) False G175647
TU237848 other upstream 297367 12897621 ~ 12898630 (-) True G175647
TU237951 other upstream 388683 12988937 ~ 12996934 (-) True G175707
TU237952 other upstream 388683 12988937 ~ 12996934 (-) False G175707

Expression Profile