RNA id: TU238001


Basic Information

Item Value
RNA id TU238001
length 877
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id LOC111195045
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 13197213 ~ 13198961 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAAGGTGAGCCTAAGCTGGGTGTGTGACTGCTTGGAGCGTGGGGCCTAGTTCCCTGAGAGTTTGTGATTTTAAGGCGGCAGAGTTGTTTGAAGTACCCATTtaagcagtgtgtttatggtgAACCACATGTTAAGaAGGCCACTATTTGTGTAGCTGGGAGTCAACACAAATAGACCCAGTCTTTCCTTGGTGTTGGTGACTTGGTAAAGAGCagGCCTACCACTGTGCTTTCTTCTGACTCTTGTCCCCTTACCCTGTAAACTGAGTGattGTTTCAGCGACTGGGTTGCTGGCTGCTTTTCTctacttatattttatttttttattttatttattttttttgtcaacttCCCCTAATGCTGCGGCTTGAGCCATTTTTAACTTGAGTGTGTTGACTTACAGTTTACGGTACATTTGGGCCCTGTTTCTATTAAAACTAATGTTTGATTAGGGCAGCCTGTTTGCTAGAAgccttttctattttattttattttaattcttttatCTTTTGTATTCAGGCTTGGGGTTTTTTGTAACGTTTGGTAGTACCAATTAGAGTGGGATATATTTTGTTTGCTCACTAATGATATTGTGCAGTGTAATATCGTGTGGgggttgctgtgtttttttttttagaatataatCACGTGTGTAATTGTATCCCTAGTTGGTTCCCCAACATTCTTAACTTTCAAGCTTTTGAAACAAACACCTTACCAAACAACTGACAGTGTTCCCGGTTTTGTTGTTATCCTCAGAATAaagatttatgtatttttgctaAAAATTGTGTATCAATTCTGTTTCTTTCGGAGCTCCCCTTTGCTCTAGGGTTAAACCAAGGGGTGGCGTAGTCTGGCATAAGTAGTAAGGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237974 lncRNA downstream 14535 13052910 ~ 13182679 (-) True G175715
TU237942 lncRNA downstream 20923 13175235 ~ 13176291 (-) True G175703
TU237975 lncRNA downstream 27091 13168809 ~ 13170123 (-) True G175716
TU237971 lncRNA downstream 127682 13065640 ~ 13069532 (-) True G175714
TU237956 lncRNA downstream 168691 13002602 ~ 13028523 (-) False LOC111195038
TU238017 lncRNA upstream 53327 13252165 ~ 13254522 (-) False LOC103044870
TU238019 lncRNA upstream 53327 13252165 ~ 13254522 (-) False LOC103044870
TU238020 lncRNA upstream 53327 13252165 ~ 13254522 (-) False LOC103044870
TU238021 lncRNA upstream 53327 13252165 ~ 13254568 (-) False LOC103044870
TU238376 lncRNA upstream 184749 13383587 ~ 13384524 (-) True G176017
XM_007235412.2 mRNA downstream 177725 13017526 ~ 13019489 (-) True LOC103041391
XM_022681071.1 mRNA downstream 185560 13007817 ~ 13011654 (-) False LOC103040161
XM_015601940.2 mRNA downstream 187283 13007817 ~ 13009931 (-) False LOC103040161
XM_007235410.3 mRNA downstream 187330 13007817 ~ 13009884 (-) True LOC103040161
XM_007235404.3 mRNA downstream 408233 12778011 ~ 12788981 (-) True uspl1
XM_022681078.1 mRNA upstream 53319 13252157 ~ 13254539 (-) False LOC103044870
XM_007235427.3 mRNA upstream 53319 13252157 ~ 13254539 (-) False LOC103044870
XM_015601936.2 mRNA upstream 53319 13252157 ~ 13254539 (-) False LOC103044870
XM_007235428.3 mRNA upstream 53319 13252157 ~ 13254539 (-) False LOC103044870
XM_007235426.3 mRNA upstream 53319 13252157 ~ 13254539 (-) True LOC103044870
TU237962 other downstream 190362 13003387 ~ 13006852 (-) True LOC111195039
TU237951 other downstream 200280 12988937 ~ 12996934 (-) True G175707
TU237952 other downstream 200280 12988937 ~ 12996934 (-) False G175707
TU237848 other downstream 298584 12897621 ~ 12898630 (-) True G175647
TU237844 other downstream 299693 12897040 ~ 12897521 (-) False G175647
XR_001518319.2 other upstream 53319 13252157 ~ 13254540 (-) False LOC103044870
XR_002651439.1 other upstream 206443 13405281 ~ 13407280 (-) True LOC111195047
TU238443 other upstream 472934 13671772 ~ 13674482 (-) True G176058
TU238444 other upstream 472934 13671772 ~ 13674482 (-) False G176058
TU238446 other upstream 472934 13671772 ~ 13674482 (-) False G176058

Expression Profile