RNA id: TU238355


Basic Information

Item Value
RNA id TU238355
length 1016
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G175999
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 14284227 ~ 14286973 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atttatttgcatttaaattaagTACAGTAAGGATGAACTTTAAGGAAGCACTTCATGGTTTGTATGGTGTCTCCAAATCTGACAGTATATCTGGCGCAGTAATATAGAACAGAAATGAGTGTTTTGTAGCACCATTTAGAACTTTAGCAAAACAGTCTGTGCTCAAAGAATCTCTCATAGGGAAGCTATCAAGTGATTTTTATAATTAGAATatactacatatatacatacagtactttTTCTTCAAACCAAAATCCAGTGTGCAAAAATTCCCCCAACTCTAATGTTTGCTAGTTCTAGCACTGGAGCtaagaggctaatgtagctaactcatATATAcgttagcatggtgctaactgcCTAAAGGTCTAAATCCTCTCATACTCTCCTCGAACTGAGTGGAGGCATTTAGTAATCTCCACAGACTCTTTACATAGGTTTTACGAAACACTGTTGTTGGctaaaatacattcaatatCCAAGTGTGCAGTGTTTGTAAGCAATACATTCAGCTACTGTAGGTTGCAGacgttgctgacacagatgtacaaatacacacacacacacacaagttgtctagtccctgtaaacAAGTATGGCCAATAGTATTTGAATCTCTTAAGCAGATACATATGAATTTACTGGCAATATTCTTACTGCAAGGTGTGGGCCAGAGGGGGGTATAAAGTTTTGGGATAATTTGGGAATGAGGTAGGGTGATAATTACCCAACATCCTGATCTCACTAAGGCTCTTagtgctgaatgcaatcaaatcctcacagcaatgctgcaaAATCTAATAGATAGCATTCCATGGACAGTAGAGAGTTACTCCAACCAAAACAGGATTAACGgacaaattattttaataacctTGATTTAGGAAGAAACAGTGAATGAACAGTTGTCCTGATACTTTTTTCACATAGTGTTTTCTGTTAGCATAGCTAAAAACAGTAGCAGCACCTTAAAGTCTGAACTGTGTCCCGTGTGTGTAAACACCAGCAAATCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238349 lncRNA upstream 5659 14277728 ~ 14278568 (+) True G175997
TU238323 lncRNA upstream 45838 14220495 ~ 14238389 (+) False LOC103042124
XR_002651442.1 lncRNA upstream 51722 14229815 ~ 14232505 (+) False LOC103042124
TU238332 lncRNA upstream 59528 14178804 ~ 14224699 (+) True G175984
TU238369 lncRNA downstream 249295 14536268 ~ 14536547 (+) True G176010
TU238651 lncRNA downstream 383311 14670284 ~ 14670678 (+) True G176216
TU238706 lncRNA downstream 552537 14839510 ~ 14917161 (+) True G176258
TU238831 lncRNA downstream 773656 15060629 ~ 15064133 (+) True G176372
TU238842 lncRNA downstream 790167 15077140 ~ 15077416 (+) True G176383
XM_007259441.3 mRNA upstream 2498 14263394 ~ 14281729 (+) True LOC103043274
XM_007259439.3 mRNA upstream 36568 14244212 ~ 14247659 (+) True atg101
XM_007259436.3 mRNA upstream 153537 14101949 ~ 14130690 (+) True trim37
XM_007259433.3 mRNA upstream 185534 14082474 ~ 14098693 (+) False rabgef1
XM_007259444.3 mRNA downstream 30432 14317405 ~ 14331559 (+) True mogat2
XM_015608417.2 mRNA downstream 53435 14340408 ~ 14352188 (+) True dgat2
XM_007259445.3 mRNA downstream 69323 14356296 ~ 14506004 (+) True uvrag
XM_022681109.1 mRNA downstream 436010 14722983 ~ 14729064 (+) True LOC111195050
XM_015608410.2 mRNA downstream 631886 14918859 ~ 14921856 (+) True LOC103022111
XR_002651440.1 other upstream 415372 13847262 ~ 13868855 (+) False prdm15
TU238204 other upstream 598664 13679359 ~ 13685563 (+) True G175900
TU238092 other upstream 865811 13389326 ~ 13418416 (+) True LOC111195048
TU238094 other upstream 865811 13411110 ~ 13418416 (+) False LOC111195048
TU238049 other upstream 956586 13320784 ~ 13327641 (+) False LOC103028411
trnal-uag_3 other downstream 640355 14927328 ~ 14927409 (+) True trnal-uag_3
TU239485 other downstream 2533986 16820959 ~ 16824317 (+) False fam136a
TU239536 other downstream 2755862 17042835 ~ 17046989 (+) True G176882
TU240029 other downstream 3937300 18224273 ~ 18226133 (+) False G177219
TU240030 other downstream 3937300 18224273 ~ 18226133 (+) True G177219