RNA id: TU238651


Basic Information

Item Value
RNA id TU238651
length 339
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G176216
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 14670284 ~ 14670678 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTTACGGAGCTGGAGCTCAGCCGGAGTCAGGTCCTCACTGCTGCCGATTATAATCcactaaaaacagtttaaactgGTTCAGAGTTAATCCAGCGCGAGAGCAGCTCCGCGTGAAGAAAACTGGAGGTAAGCGAAATAAAGCATCATATAGAAAAATCCACCAGCAGCTCGCGAGCTTCCTGCCGCTCTTTCTCCTCGCGTTTTCTCGCTGTCTCGTGCGCCTCTCGCGCTGCAGCCCTGAGGAATGCGCTGCACCGACTGGCTCGCGCTCTGCGAGTGGatgagagagagagagagagggggtgagCACGCAGGCAGGAGACAGAGAGCGAGCgagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238369 lncRNA upstream 133737 14536268 ~ 14536547 (+) True G176010
TU238358 lncRNA upstream 382010 14285302 ~ 14288274 (+) True G176000
TU238354 lncRNA upstream 383311 14284227 ~ 14286973 (+) True G175999
TU238355 lncRNA upstream 383311 14284227 ~ 14286973 (+) False G175999
TU238349 lncRNA upstream 391716 14277728 ~ 14278568 (+) True G175997
TU238706 lncRNA downstream 168832 14839510 ~ 14917161 (+) True G176258
TU238831 lncRNA downstream 389951 15060629 ~ 15064133 (+) True G176372
TU238842 lncRNA downstream 406462 15077140 ~ 15077416 (+) True G176383
TU238843 lncRNA downstream 407040 15077718 ~ 15078159 (+) True G176384
TU238853 lncRNA downstream 430799 15101477 ~ 15124591 (+) True G176394
XM_007259445.3 mRNA upstream 164280 14356296 ~ 14506004 (+) True uvrag
XM_015608417.2 mRNA upstream 318096 14340408 ~ 14352188 (+) True dgat2
XM_007259444.3 mRNA upstream 338725 14317405 ~ 14331559 (+) True mogat2
XM_007259441.3 mRNA upstream 388555 14263394 ~ 14281729 (+) True LOC103043274
XM_007259439.3 mRNA upstream 422625 14244212 ~ 14247659 (+) True atg101
XM_022681109.1 mRNA downstream 52305 14722983 ~ 14729064 (+) True LOC111195050
XM_015608410.2 mRNA downstream 248181 14918859 ~ 14921856 (+) True LOC103022111
XM_007241731.3 mRNA downstream 811381 15482059 ~ 15487211 (+) True LOC103024204
XM_007241733.3 mRNA downstream 826801 15497479 ~ 15501315 (+) True LOC103024827
XM_022681117.1 mRNA downstream 1123586 15794264 ~ 15939778 (+) True LOC103047397
XR_002651440.1 other upstream 801429 13847262 ~ 13868855 (+) False prdm15
TU238204 other upstream 984721 13679359 ~ 13685563 (+) True G175900
TU238092 other upstream 1251868 13389326 ~ 13418416 (+) True LOC111195048
TU238094 other upstream 1251868 13411110 ~ 13418416 (+) False LOC111195048
TU238049 other upstream 1342643 13320784 ~ 13327641 (+) False LOC103028411
trnal-uag_3 other downstream 256650 14927328 ~ 14927409 (+) True trnal-uag_3
TU239485 other downstream 2150281 16820959 ~ 16824317 (+) False fam136a
TU239536 other downstream 2372157 17042835 ~ 17046989 (+) True G176882
TU240029 other downstream 3553595 18224273 ~ 18226133 (+) False G177219
TU240030 other downstream 3553595 18224273 ~ 18226133 (+) True G177219

Expression Profile