RNA id: TU238843


Basic Information

Item Value
RNA id TU238843
length 442
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G176384
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 15077718 ~ 15078159 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGCTGCAAGACCATTTAAATTCTAAACAACTAAAAGCACTTTAAACTGTATTCTGTATTGGACTGGTAGCAATGAAGCGAGGCGAGAACTGGAGttatatatcttttttgtttgtttttttgttaaaaatcttCATGCAGCATTCTGGACTAACTCTAAGCGATGCAGAAGAGACTGGTTAATCctaatgtacagtactgtgaaaAGCTTtcagcaccaaagcaaattacactaaatcCTTTTTTCTCAGCAATATgaatgtttttacctgaaaaaagcaccacatatgatttaaacagatgcaaataaacattaatacagtaaaacgcaacagggaattctcatttttaactgtaAGTATGTTAGATCCTGTGAGCCTGAAGCTGAAGaataaagtgtagagattccagatttctcctggatgctcctcagccagcatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238842 lncRNA upstream 302 15077140 ~ 15077416 (+) True G176383
TU238831 lncRNA upstream 13585 15060629 ~ 15064133 (+) True G176372
TU238706 lncRNA upstream 160557 14839510 ~ 14917161 (+) True G176258
TU238651 lncRNA upstream 407040 14670284 ~ 14670678 (+) True G176216
TU238369 lncRNA upstream 541171 14536268 ~ 14536547 (+) True G176010
TU238853 lncRNA downstream 23318 15101477 ~ 15124591 (+) True G176394
TU238855 lncRNA downstream 23318 15101477 ~ 15114480 (+) False G176394
TU238891 lncRNA downstream 184037 15262196 ~ 15275158 (+) True G176426
TU238915 lncRNA downstream 433976 15512135 ~ 15521326 (+) True G176444
TU238924 lncRNA downstream 448006 15526165 ~ 15565245 (+) False G176448
XM_015608410.2 mRNA upstream 155862 14918859 ~ 14921856 (+) True LOC103022111
XM_022681109.1 mRNA upstream 348654 14722983 ~ 14729064 (+) True LOC111195050
XM_007259445.3 mRNA upstream 571714 14356296 ~ 14506004 (+) True uvrag
XM_015608417.2 mRNA upstream 725530 14340408 ~ 14352188 (+) True dgat2
XM_007259444.3 mRNA upstream 746159 14317405 ~ 14331559 (+) True mogat2
XM_007241731.3 mRNA downstream 403900 15482059 ~ 15487211 (+) True LOC103024204
XM_007241733.3 mRNA downstream 419320 15497479 ~ 15501315 (+) True LOC103024827
XM_022681117.1 mRNA downstream 716105 15794264 ~ 15939778 (+) True LOC103047397
XM_022681118.1 mRNA downstream 794093 15872252 ~ 15880621 (+) True LOC111195055
XM_022681119.1 mRNA downstream 865471 15943630 ~ 15985372 (+) True LOC103046796
trnal-uag_3 other upstream 150309 14927328 ~ 14927409 (+) True trnal-uag_3
XR_002651440.1 other upstream 1208863 13847262 ~ 13868855 (+) False prdm15
TU238204 other upstream 1392155 13679359 ~ 13685563 (+) True G175900
TU238092 other upstream 1659302 13389326 ~ 13418416 (+) True LOC111195048
TU239485 other downstream 1742800 16820959 ~ 16824317 (+) False fam136a
TU239536 other downstream 1964676 17042835 ~ 17046989 (+) True G176882
TU240029 other downstream 3146114 18224273 ~ 18226133 (+) False G177219
TU240030 other downstream 3146114 18224273 ~ 18226133 (+) True G177219
XR_002651448.1 other downstream 3246714 18324873 ~ 18330489 (+) False LOC103047412

Expression Profile