RNA id: XM_022681117.1


Basic Information

Item Value
RNA id XM_022681117.1
length 7367
RNA type mRNA
GC content 0.48
exon number 41
gene id LOC103047397
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 15794264 ~ 15973657 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaccctGATTCGGTTTATCATGGCGATGGGACATCCTGAGCTGCAGTAGGACAGTTTTCAGCAACTTTATCTCCAGAAAAACCGAGAAAAGTCACTTTTTCGCGCTTTGCGATGTTACGGGACGGCACGCGGCTGCGCTAAATCTGCAGGTTAAACTCCAGCGCTGGGATTTAGCGGAGGAAAAAGCTGGCATGTCTCTGCTCTGTGTGAGAGTAAAGAAAGCCAAACTCCAGGGGCCTCCAGATAAATTTAACGCCTATGTGACGCTGAAGGTGCAGAATGTCAAGAGCACGACCGTCACAGTGCGAGGAGACCAGCCGTGCTGGGAGCAGGACTTCATGTTtGAGATCAGCCGGCTGGACCTGGGTCTGATAGTGGAGGTTTGGAACAAAGGGCTGATCTGGGACACCATGCTGGGAACGGCATGGATCCCCCTCAAGAGCATATGCCAATCAGAAGAGGAGGGTCCAGGCGAGTGGACGTTTCTGGACTCGGAAGTTTTGATGAAAGCAGATGAAATTTATGGCACCAAAAATCCCACACCTCATCGGGTCCTGCTGGACACTCGCTTTGAGCTGCCCTTCGAAATCCCAGAGGACGAGGCTCGGTACTGGTCCAGTAAACTTGAGCGCATCAACACTATGGGGATCCATGATGAGTACACGCTGCAGGAAGATGTGGGGAGACACCCGCTGCCGTTTGTAGCGTCTCAGTGCTCTCTGGATGATCTGGACAGTGCGGTGGACGATCGGGACAGTGACTACAGGAGCGAGACGAGCAACAGCCTTCCCCCGCGGTATCACACCACCGCCCAGCCCAACTCCTCCCTGCACCAGTACCCCATGGGACCACGCCCCCAGAAGCACATCGACTCCTGCACTGACTCTGTACACAGCTTTGATCTGGACTATAGAGATCATCACGCCAGCAGCCCGGCAGACAGTAGTCGCTTCGGATCTTCAGGAAACCTTAGTCAAGCCAGTTCACCACTCAGTGAGGCCGGCCAGGAGAGCATCGTCTGTTCAGAACTTGAGGAGTCCTACCACTCCTTCCATAGCACAGGTTATCGCCCACCCACAAATGGGCACCATCCAGCCAATGGACACACCTCCTGGGGGGAAGAGGAGGGCTTGAAATCTTCTACTCAGGAGACTGGAAGGACAGTGATCAGCACCGTAGTTAAAGACAGTGTTCCCCAGGAGGAGAAGCGATTagaaaaatctcagaaaagTTTTCAGGATGACGGACCGCCGCTGCCGTTCTCCTCGTCTCGAGTGCGCTGGCTAAAGGCCATCAACAAAGTGAGAGCTCAGCTTCAGGAGGGTCGACAGAATGGAGATAATGCCAGACACGCCTGGATCAAAGCAGGGTGTGGGAGTGGCCTATTCGGGATTGACAGCATGCCGGATTTACGGAAGAGGAAGCCGATCCCGCTCGTCAGTGATGTGTCGCTGGTCCAGGCCAGGAAAGCGGGCATCGCATCCGCCATGGCGTCTCGCTCATCCATCAAAGACGAGGAGCTGAAGAGTCATGTGTATAAGAAGACGCTGCAGGCTCTGATCTACCCCATATCCTGCACCACGCCCCATAACTTCGAGGTTTGGACGGCGACCACGCCCACCTACTGCTACGAGTGTGAGGGGCTGCTGTGGGGCATCGCCCGGCAGGGTATGCGCTGCACCGAGTGCGGGGTGAAGTGCCACGAGAAGTGCCAGGAGCTCCTCAATGCAGACTGTCTTCAACgaGCTGCGGAGAAGAGCTCGAAGCACGGCGCTGAGGACCGAACTCAGAACATCATCATGGCCATGAAGGACCGTATGAAGATCCGGGAGCGGAACAAGCCGGAGATCTTCGAGGTCATCAGGGACGTGTTCATGGTCACCAAGGCTTTACACGGCCAGCAGATGAAGACCATCAAACAGAGCGTGCTGGACGGCACGTCCAAGTGGTCCGCCAAGATCACCATCACCGTGGTGTGTGCCCAGGGGCTGCAGGCTAAAGATAAGACCGGATCCAGTGACCCCTACGTGACCGTCCAGGTGGGGAAGACTAAGAAGAGGACCAAGACCATCTACGGCAACCTGAACCCCATCTGGGACGAGAAGTATCACTTCGAGTGCCATAACTCTTCGGACAGGATTAAGGTTCGCGTGTGGGATGAAGACGATGATATAAAGTCCAGAGTGAAGCAAAGGCTGAAGAGAGAGTCTGATGACTTCCTGGGGCAGAGCATCATCGAAGTGCGAACGCTGAGCGGGGAAATGGACGTCTGGTACAACCTGGAGAAAAGAACTGATAAGTCTGCAGTGTCCGGCGCGATCCGTCTTCAGATCAGTGTGGAAATTAAAGGAGAAGAGAAAGTGGCTCCTTACCATGTGCAGTACACCTGTCTACACGAGAACCTCTTCCACCACACCACGGACGTCCTTGGCCAGGGAGCGGTGAGGATCCCGGACGCCCGCGGGGACGACGCCTGGAAGGTTTATTTTGACGATGTGGCGCAGGAGATAGTGGACGAGTTCGCAATGCGTTATGGGATTGAGTCCATCTACCAGGCCATGACGCACTTCGCTTGTCTTTCCTCTAAGTACATGTGTCCTGGTGTACCCGCTGTGATGAGCACCCTGCTGGCCAACATTAACGCCTTCTACGCTCACACCACCGCCTCCACCAACGTCTCCGCCTCCGACCGCTTCTCCGCCTCAAACTTTGGGAAAGAGCGGTTCGTGAAGCTCCTGGACCAGCTGCACAATTCTCTACGTATTGATCTCTCCATGTACCGGAATAACTTCCCTGCTAGCAGTAAGGACCGCCTGCAGGACCTCAAGTCCACAGTGGACCTGCTGACCAGCATCACCTTCTTCAGAATGAAGGTCCAGGAACTGCAGAGTCCTCCCAGAGCGAGCCAGGTGGTGCGAGACTGTGTGAAGGCGTGCCTTAACTCCACCTACGACTACATCTTCAACAACTGCCAGGAACTCTACAGCCGGCAGTACCAGCCAGTAGGAGATCTGAATAAAGAGGAATGTCCTCCAGAGGAACAGGGACCCAGCATCAAGAACCTGGACTTCTGGCCCAAACTCATCACCCTGATCGTCTCCATCATCGAGGAGGATCGCAACTCATACACACCCGTCCTCAACCAGTTTCCTCAGGAGCTGAATGTGGGGAAAGTTTGTGCCGAGGTCATGTGGATTCAGTTCTCTCAGGATATGAAGTACGCCATGGAAGAGCATGAGAAGCATCGTCTGTGTAAGAGCGCAGACTACATGAACCTGCACTTTAAGGTGAAGTGGCTCTATAACGAGTACGTGAAGGATCTTCCAGCCTTCAAAGGAGTGATTCCTGAATACCCAACGTGGTTCCTGCAGTTTGTGCTGCAGTGGCTGGATGAGAATGAAGACGTGTCGATGGAGTTCATGCACGGGGCTCTCGAGAGGGATAAGAAGGATGGCTTTCAGCAGACGTCTGAGCACGCTCTGTTCTCCTGCTCAGTGGTGGACATCTTCACCCAGCTCAACCAGAGCTTTGAGATCATAAAGAAGCTGGACTGTCCCGACCCCAAAGTCATGGCCCACTACAGCCGCCGCTTCGCCAAGACCATTGCCAAAGTGCTGCTGCAGTACAGCGCAATCCTGAAGAAGAGCTTCCCGTCCTACTGTGATAAGGAGAAAATCCCGTGCGTCCTGATGAATAACGTGCAGCAGCTGCGGGTTCAGCTGGAGAAGATGTTCGAGTCAATGGGAGCCAAACAGatggACTCTGAAGCCAGTGATGTTCTGAATGAGCTGCAGGTGAAGCTGAATAACGTCCTGGATGAGCTGAGCTCCACGTTTGCCAACACTTTCCAGACCCGTATTGATGAGTGTATGAGGCAGATGGCCAGTTTGCTGTATCAGATTAAAGGACCGGTCAACGCCAACAGCCGCAACCAGGTGGAGGGCGATGCGGACAACGTTCTGCGACCGCTTATGGACTTCCTGGATGGAAAtctgaCGCTGTTTGCGTCGGTGTGTGAGAAGACTGTATTGAAGCGAGTGCTAAAGGAGCTCTGGAGGATCGTGATGAACAGCCTGGAGAAAACCATCGTCCTACCACAGGGCAACGACACCTTCGGGACAATATTTTCTGCAGCTAAAGACCTGGGTCAGCTCTCTAAACTAAAGgatCACATGTCTGGAGAGGCTAAAAGCCTGACGCCAAAGCAGTGTGCGGTCATGGACGTGGCCCTGGACACCATAAAGCAATATTTCCATGCTGGAGGGAACGGGCTGAAGAAGGCGTTTCTGGAGAAAAGCCCAGAGCTGACGTCCCTCCGCCACGCCCTGTCCCTCTACACCCAGACCACCGACACCCTCATCAAAACCTTCGTCACCACCCAGCACACCCAGGTGCATGGTGGGAAGGGGATGAGGATAACTCCCAGTGAGAGAACTCAGCCGTCTCGGGGTTCAGGTGTGGATAAACCGGTGGGAGAGGTTTCCATTCAGATTGACCTGTTCACCCACCCCGGCACAGGAGAACACAAGGTCACGGTGAAAGTGGTGGCGGCGAATGATCTGAAGTGGCAGACGTCTGGAATGTTCCGTCCGTTTGTGGAGGTAACGATGATCGGTCCTCACCTCAGCGACAAGAAGCGCAAATTCACCACCAAGTCCAAGAACAACAGCTGGGCCCCCAAATTCAACGAGACCTTTCACTTTATTCTGGGTAATGAGGACGGGCCGGAGTGTTACgagctgcaggtgtgtgtgaagGATTACTGCTTCGGCCGGGCGGACCGGGTGGTGGGCATCGCCATGATCCAGCTGCGAGACGTGGCGCAGAGGGCCAGCTGTGCCTGCTGGTGCCCGCTGGGTACTCAGGTGCACATGGACGACACGGGGCTGACGGTGATGCGCATCCTGTCGCAGCGCTCCGGAGACGAGGTCGCAAAAGAGTTCGTTAAACTGAAGTCGGAAACTCGCTCGGCCGAGGAGGGAAGGTGAGGAACCGGAGGAACCAGATAAATGTCTGATTATAAAACTAGAGGAGGATCTGTACAGACTggagaactgctgctgatgatcaacgaaggaggaggaggggctTAACGGAGTGGGTGGAGCCAgccagaggaggaagaggaggagtctTTCTATCTGGCTGTAATGCACTGGACTTATTATGTGGCTGCTTGTTTCACTTTTCACTGATGAGAAGTCATAATTTTTCTGTCTActtctaataataaatatatgtaaatatatacaaatagaaaaataagaattagggctgtcaaaaaaagttttaacaaGTTTTATTTCTCATCACCTGGGTTAAAACTTGggttaaaaattttttttggtcactgTTTGCTGATTTACCTGCTCTAACAGCAATACAACTACACCTGACATTGAACAGTTGAGATTATAAAGTAATCAGGTGAGCTTGAACAGGTAGAGCTCGAAAATGGGCATGAATGTGAATTAAATCCACCAGGACCAAAATTGCTTCTTGAACCTACTCAGATaccatatatataccatatttgcagaTGAGATGTCATCATATTCTGTCTActtctaataataattatatataaatatatacaaatgcaaaaatatCAATTATGGCtgtcaaaaaaaagttttaacaaGTTTTATTTCTTATCACTTGGGttaaaactgttgttttttttggcaaCTATTTGCTAATTTACCTGCTCTAACAGCGATACAACTACACCTGGCTTTGAACGGGTGAGATTAATCAGGTAATCAGGTGAGCTTGAACAGGTACAGCTCGAAAATGTGCACCAAAATTGCTACTTTAACCTGCTCTAGTTTAAAGCATCAAATTATGAAACTAGAAAACTGTGCTGGTggcttttaaacatggtggcgtAAGCCTTTGCCTTTGACAGCACTAATATACCAATTCCAGATACCATATATAAACCTTATATACTGATGAGATATCATCATATTCTGTCTAtttctaaataataatgataataatatatacataaaaacaaaaatataaaaaatctaaaaaattatTCTCATCACGTGGGTtgaaacagaattttttttttggccactgTTTTCTGATTTACCTGCACTAACAGCAATACAACTTCACCTGGCATTGAGCGGGTGAGATTAATCAGGTAATCAGGTGAGCTTGAACAGGTAAAGCACGAAAATGTGCATTAATTGCATTAATCTCTAGGTTAAAGGTTGAAATTACGAAACTAAGAAATTGTGCTGTtggctgttaaacatggtggcgtAAGCCTTTGCCTTTGACAGCACTACAATACAGATGCCAGATACCATACATTTACATGACTAAAGAACACTGGATGGTAAATTGGCCTTTTATGACGTAttcctgatacacacacacacaggacacactcacacatgatagcacctcacaacttatacaggtgtgcatGGGCGTTCCCAGGTCAGCTGTCCTCTAaggtgtattgtgtatattacATTCCTCGTTCACTCTCACCACTCAtcatatacagtgtatatatttagCCTTTGGTCACTTTATATGTTAGATAGGCCTCAAACACTAGAGCACACAGGGTCCCTAGATGtattgtgcacttttttttttgttgtttttttttaactacgcCCCCTATTGACCCCGCCCACTTACCATGTGTATAAAAGCcttattattgctatttttttttttttttttgcggttACTTGGTGAATGTTCTTCACATTTGAGGACAGTTAGaactgtgtgtatttttttttctcaccagtaggttcagtttgtgtttttagGACCCTGTAATCTGTAAGTGGTATATAAACGTATCGCCTCACTTTAAAAGCAATTCATGATGTGTTTGACAGCCAATCGTGTGCCTTTCGAACCGAGGAGGGTGTGTTCTGGTGTTctgtggatgatgatgatgatgatggtctTATTGTCTTACATTTCACATAAAATACATGATAGCATGTTATTACTGTCATAGGAAACCTTTCAAACTCTCTAAAATTGTCCCAAATGCTctttaaaatctcaaaaattgttttctttaaagctCCTGTACTATTTTTGGCCATACTGACCTATTTCAAGGTTGAAAAATTATCTTATTAATAATCAAGTAAATAGGTTAAATTGATGTAATAACCAtgtggaaaataataataataataataattataggtTGTAATTCAGACCCACAAAACCGTACTACCAGTTttgaattttttaaaatgttctgctttaatatattaatgGATTAATAGATTTATAgtagtcattcaaactatgaagaaaaacgagtggaatttttgttttagtacacgtaaaaaaaaaaaagttttcaacaAACG

Function

GO: NA

KEGG:

id description
K15293 UNC13A_B_C, MUNC13; protein unc-13 A/B/C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239058 lncRNA upstream 3604 15784590 ~ 15790660 (+) True G176522
TU239054 lncRNA upstream 10877 15780450 ~ 15783387 (+) True G176520
TU239052 lncRNA upstream 12290 15780450 ~ 15781974 (+) False G176520
TU239042 lncRNA upstream 37252 15755654 ~ 15757012 (+) True G176511
TU239041 lncRNA upstream 39085 15754554 ~ 15755179 (+) True G176510
TU239120 lncRNA downstream 87618 16027396 ~ 16029377 (+) True G176561
TU239155 lncRNA downstream 190714 16130492 ~ 16133397 (+) True G176579
TU239153 lncRNA downstream 191854 16131632 ~ 16133397 (+) False G176579
TU239159 lncRNA downstream 202752 16142530 ~ 16142972 (+) True G176582
TU239180 lncRNA downstream 246895 16186673 ~ 16187045 (+) True G176602
XM_007241733.3 mRNA upstream 292949 15497479 ~ 15501315 (+) True LOC103024827
XM_007241731.3 mRNA upstream 307053 15482059 ~ 15487211 (+) True LOC103024204
XM_015608410.2 mRNA upstream 872408 14918859 ~ 14921856 (+) True LOC103022111
XM_022681109.1 mRNA upstream 1065200 14722983 ~ 14729064 (+) True LOC111195050
XM_007259445.3 mRNA upstream 1288260 14356296 ~ 14506004 (+) True uvrag
XM_022681119.1 mRNA downstream 3852 15943630 ~ 15985372 (+) True LOC103046796
XM_022681120.1 mRNA downstream 52535 15992313 ~ 16008456 (+) True rusc2
XM_007231984.3 mRNA downstream 82383 16022161 ~ 16035564 (+) True LOC103044056
XM_022681131.1 mRNA downstream 417405 16357183 ~ 16404802 (+) True sppl3
XM_022681136.1 mRNA downstream 625971 16565749 ~ 16654846 (+) True LOC103042004
trnal-uag_3 other upstream 866855 14927328 ~ 14927409 (+) True trnal-uag_3
XR_002651440.1 other upstream 1925409 13847262 ~ 13868855 (+) False prdm15
TU238204 other upstream 2108701 13679359 ~ 13685563 (+) True G175900
TU238092 other upstream 2375848 13389326 ~ 13418416 (+) True LOC111195048
TU239485 other downstream 881181 16820959 ~ 16824317 (+) False fam136a
TU239536 other downstream 1103057 17042835 ~ 17046989 (+) True G176882
TU240029 other downstream 2284495 18224273 ~ 18226133 (+) False G177219
TU240030 other downstream 2284495 18224273 ~ 18226133 (+) True G177219
XR_002651448.1 other downstream 2385095 18324873 ~ 18330489 (+) False LOC103047412

Expression Profile