RNA id: TU239461


Basic Information

Item Value
RNA id TU239461
length 1795
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G176832
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 16824976 ~ 16828069 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAAGAGTGCCAAGCTCTCTTTATACCTTTTAGATCCTCCCATCCCTTACTTCCCAATTATGGGCACAGTGCCACCATTGTGACACGTCAACTTCTTCTGACAGGTGGTATGACATAATCCCTTAGTGAGCATATCAGACTGGTTCTCAAAACACCGCAAGCAGAAGGAAAAATGACCCTGGCGCCAGAATTGTAGACAGAACAATCCGTGACGTGCACACATACATAGACACACACTGCTTTCCCCAGATAGAAAAACTCTCACTCAGCATCTTAGATATGCTCCTGAGTACACATTATCATCGCATGGaacaaaaagtaatatcattaatagtcgtcattgtttatgaatcatcacacgtcattgattatgaatcatttcagTAAACACTTTCCATCACACTCCCCCCTTTGATTCTGAATCAATAAtgaaattttctttttacagctaATTTTATTTACCTTCATTAAACAAACGGTCTAGCCCAAATGCAGTATCTAACTCtattgtatctactgtaacttgcAGGAACTGGCCTTTCTTCTGCATATGGCGGAACaaaaattaatagatatatattagaaaagagtaaaagtacatcaacaaataaaatctCGATAGATCAACACATTTGCAacccatagagagagagagaagagagagagagaaagaaacagagagagagagaaagaaactaaaGCCAGTCGAGGGACAGAGAGAACTCCTCATacttcatccaagcagttatacactttgcaaatgacatgtgattgtacagaacttatcaatatgattacgtcagcagagtccagttaacagcatgttgtccagttttaatgacgtgattagctccagcctgtctgagcaacaggttcttatcatgatgttgttcagcactgtgtccttcatgaacacagcagacagtccttaagtgtcctaaagtctGTAAGAAGATgagacagaggaaaagagtggaTGTAAAGATCTTCTGgctatctgaggagaggtttccagcacttcactcagataacttgttgtctcctagttcatatgcactggtcccagaacagcagaacagcagtgaagcttctctgccactcagggtcacattctcctcacagctctcactgttgatgaaaacactctgaccttcctgattcctgaaaaaagtaaaaaaaacaacctccaaagccttgtcatagtgacagttaaaaagagagcagagatcataaggttattaagtgaattataatgtgaacagtaaaaataataactgtatatataaatgtataaaacatttaagaataagagtgtgaaggtgtggttatctccaatcatACCCTTCACTCCCCCCTTCTAGACCAAATGGAATCATCCAAGATTCCATGATGGTCTAcATAACGCCTAAGAAGCCCCGGGAGTAATGACAAGTGTCCGCATACAGAGCATGAGAACAAGTGTTTCTTCATCTCAGCTGTGGACATGCTGGGGCCTATTGCACACCAGTCCCCACGCCGGACTCTCCCTGCCTCGTCATGCCCACCATGGATCTGAGAAGATTCATAAACAAATTTTACTACattaactttctctttttttttccagaattacAACATGaagtttaaaagtgttaaaatcaaGTCAATGTTTTTCAACATTGTCACTGTTTTCGCTCTAGACTATAGAATACATAgtctcaacatttatttatcaaatgccttcatattttcttttaacctTTCACATTGTCTAATTTAATCTTCAACCacaataatgtatatttttttatgcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239473 lncRNA upstream 9392 16810336 ~ 16815584 (+) True G176838
TU239475 lncRNA upstream 9392 16812120 ~ 16815584 (+) False G176838
TU239477 lncRNA upstream 9744 16808519 ~ 16815232 (+) False G176838
TU239482 lncRNA upstream 10241 16808321 ~ 16814735 (+) False G176838
TU239478 lncRNA upstream 10241 16808519 ~ 16814735 (+) False G176838
TU239491 lncRNA downstream 2581 16830650 ~ 16832355 (+) True G176846
TU239495 lncRNA downstream 28890 16856959 ~ 16868115 (+) True G176847
TU239502 lncRNA downstream 44788 16872857 ~ 16948550 (+) True G176852
TU239527 lncRNA downstream 193582 17021651 ~ 17024488 (+) True G176874
TU239545 lncRNA downstream 244444 17072513 ~ 17072918 (+) True G176888
XM_007228800.2 mRNA upstream 648 16820935 ~ 16824328 (+) True fam136a
XM_007257805.3 mRNA upstream 56672 16736912 ~ 16768304 (+) True slc20a1
XM_022681138.1 mRNA upstream 139494 16677496 ~ 16685482 (+) True drg1
XM_022681136.1 mRNA upstream 170130 16565749 ~ 16654846 (+) True LOC103042004
XM_022681131.1 mRNA upstream 420174 16357183 ~ 16404802 (+) True sppl3
XM_007228801.3 mRNA downstream 17877 16845946 ~ 16862878 (+) True ggcx
XM_022681152.1 mRNA downstream 159141 16987210 ~ 17002229 (+) True LOC103040133
XM_007228808.3 mRNA downstream 159141 16987210 ~ 17002229 (+) False LOC103040133
XM_007228827.3 mRNA downstream 489049 17317118 ~ 17330838 (+) True tctn1
XM_022680710.1 mRNA downstream 635932 17464001 ~ 17490044 (+) True dhx29
TU239485 other upstream 659 16820959 ~ 16824317 (+) False fam136a
trnal-uag_3 other upstream 1897567 14927328 ~ 14927409 (+) True trnal-uag_3
XR_002651440.1 other upstream 2956121 13847262 ~ 13868855 (+) False prdm15
TU238204 other upstream 3139413 13679359 ~ 13685563 (+) True G175900
TU238092 other upstream 3406560 13389326 ~ 13418416 (+) True LOC111195048
TU239536 other downstream 214766 17042835 ~ 17046989 (+) True G176882
TU240029 other downstream 1396204 18224273 ~ 18226133 (+) False G177219
TU240030 other downstream 1396204 18224273 ~ 18226133 (+) True G177219
XR_002651448.1 other downstream 1496804 18324873 ~ 18330489 (+) False LOC103047412
TU240134 other downstream 1711829 18539898 ~ 18543997 (+) False LOC103024155

Expression Profile