RNA id: TU239844


Basic Information

Item Value
RNA id TU239844
length 259
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G177086
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 17563633 ~ 17563891 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGTAATCATGTGAACAATACACGTATCTCCAAGTCGCTTCACACCTGCAGTCTGAGAGTGGGTAATTCTGCTGAGTTCGCTGAAAGGCCTTTTTTCCCTCTACTGATTAGCCAGTGATGTAAACAGGGGAACTTATCCGGGCTGCGTCTCAAATCTCTGAACTGCTGCCTACTGAGGGAGGATTCTGAGGCAGCAAGAGTTTAGTAATCCAGCTCTCTGTTCACAGTGAAAACATAAtgatctatttgtctgtctggc

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
ko04721 Synaptic vesicle cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239813 lncRNA upstream 13671 17548734 ~ 17549962 (+) True G177068
TU239832 lncRNA upstream 17663 17543550 ~ 17545970 (+) True G177080
TU239834 lncRNA upstream 18590 17543550 ~ 17545043 (+) False G177080
TU239819 lncRNA upstream 71774 17488749 ~ 17491859 (+) True G177070
TU239807 lncRNA upstream 111353 17448485 ~ 17452280 (+) True G177065
TU239884 lncRNA downstream 63190 17627081 ~ 17627359 (+) True G177123
TU239889 lncRNA downstream 80911 17644802 ~ 17645712 (+) True G177128
TU239893 lncRNA downstream 83156 17647047 ~ 17647547 (+) True G177132
TU239931 lncRNA downstream 221023 17784914 ~ 17785180 (+) True G177162
TU239940 lncRNA downstream 264617 17828508 ~ 17829138 (+) False G177169
XM_022680711.1 mRNA upstream 63772 17492213 ~ 17499861 (+) True LOC103023379
XM_022680710.1 mRNA upstream 73589 17464001 ~ 17490044 (+) True dhx29
XM_007228827.3 mRNA upstream 232795 17317118 ~ 17330838 (+) True tctn1
XM_022681152.1 mRNA upstream 561404 16987210 ~ 17002229 (+) True LOC103040133
XM_015602829.2 mRNA downstream 1023 17564914 ~ 17571469 (+) True LOC103021841
XM_022680712.1 mRNA downstream 84076 17647967 ~ 17702116 (+) True itga1
XM_007254931.3 mRNA downstream 574821 18138712 ~ 18171735 (+) True xpo7
XM_007254932.3 mRNA downstream 574821 18138712 ~ 18171735 (+) False xpo7
XM_007254933.3 mRNA downstream 574821 18138712 ~ 18171735 (+) False xpo7
TU239536 other upstream 516644 17042835 ~ 17046989 (+) True G176882
TU239485 other upstream 739316 16820959 ~ 16824317 (+) False fam136a
trnal-uag_3 other upstream 2636224 14927328 ~ 14927409 (+) True trnal-uag_3
XR_002651440.1 other upstream 3694778 13847262 ~ 13868855 (+) False prdm15
TU238204 other upstream 3878070 13679359 ~ 13685563 (+) True G175900
TU240029 other downstream 660382 18224273 ~ 18226133 (+) False G177219
TU240030 other downstream 660382 18224273 ~ 18226133 (+) True G177219
XR_002651448.1 other downstream 760982 18324873 ~ 18330489 (+) False LOC103047412
TU240134 other downstream 976007 18539898 ~ 18543997 (+) False LOC103024155
TU240867 other downstream 2156410 19720301 ~ 19722389 (+) False LOC111194983

Expression Profile