RNA id: TU239989


Basic Information

Item Value
RNA id TU239989
length 233
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G177188
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 17980153 ~ 17980385 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtcaattctgtcgtatatttacattttctcctgttttttttttctactgagagctcttcttaagatggtgtccttttatgtaaaagaatgtaactttacgtttcatagagacttttataaacgtcaggacatgtggtcttactgtgaactacaaatgaacagaagtcacgttacagcagtgtttctcaaccctgttcttacatattctactgcatattaacactgttctgcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239941 lncRNA upstream 149719 17828508 ~ 17830434 (+) True G177169
TU239940 lncRNA upstream 151015 17828508 ~ 17829138 (+) False G177169
TU239943 lncRNA upstream 151185 17828508 ~ 17828968 (+) False G177169
TU239931 lncRNA upstream 194973 17784914 ~ 17785180 (+) True G177162
TU239893 lncRNA upstream 332606 17647047 ~ 17647547 (+) True G177132
TU239992 lncRNA downstream 23335 18003720 ~ 18003980 (+) True G177191
TU239999 lncRNA downstream 99624 18080009 ~ 18080720 (+) True G177198
TU240002 lncRNA downstream 117526 18097911 ~ 18098187 (+) True G177201
TU240005 lncRNA downstream 122701 18103086 ~ 18105113 (+) True G177203
TU240017 lncRNA downstream 190040 18170425 ~ 18174518 (+) False xpo7
XM_022680712.1 mRNA upstream 278037 17647967 ~ 17702116 (+) True itga1
XM_015602829.2 mRNA upstream 408684 17564914 ~ 17571469 (+) True LOC103021841
XM_022680711.1 mRNA upstream 480292 17492213 ~ 17499861 (+) True LOC103023379
XM_022680710.1 mRNA upstream 490109 17464001 ~ 17490044 (+) True dhx29
XM_007228827.3 mRNA upstream 649315 17317118 ~ 17330838 (+) True tctn1
XM_007254931.3 mRNA downstream 158327 18138712 ~ 18171735 (+) True xpo7
XM_007254932.3 mRNA downstream 158327 18138712 ~ 18171735 (+) False xpo7
XM_007254933.3 mRNA downstream 158327 18138712 ~ 18171735 (+) False xpo7
XM_007254934.3 mRNA downstream 158327 18138712 ~ 18171735 (+) False xpo7
XM_007254937.3 mRNA downstream 201355 18181740 ~ 18212818 (+) True LOC103045166
TU239536 other upstream 933164 17042835 ~ 17046989 (+) True G176882
TU239485 other upstream 1155836 16820959 ~ 16824317 (+) False fam136a
trnal-uag_3 other upstream 3052744 14927328 ~ 14927409 (+) True trnal-uag_3
XR_002651440.1 other upstream 4111298 13847262 ~ 13868855 (+) False prdm15
TU238204 other upstream 4294590 13679359 ~ 13685563 (+) True G175900
TU240029 other downstream 243888 18224273 ~ 18226133 (+) False G177219
TU240030 other downstream 243888 18224273 ~ 18226133 (+) True G177219
XR_002651448.1 other downstream 344488 18324873 ~ 18330489 (+) False LOC103047412
TU240134 other downstream 559513 18539898 ~ 18543997 (+) False LOC103024155
TU240867 other downstream 1739916 19720301 ~ 19722389 (+) False LOC111194983

Expression Profile