RNA id: TU240025



Basic Information


Item Value
RNA id TU240025
length 741
lncRNA type sense_over
GC content 0.47
exon number 2
gene id G177216
representative True

Chromosome Information


Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18249428 ~ 18258855 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


aaatgtaataccctaaattgatctggtgtgacTGTGCCCAAGTGTTAATTGGCACTCTGTACTTgttaaatgctgtagtgcctgatgcagtgctccaggtggacagtcgtttctggttgagagtacgctgtgcgctcttggctgccgcttctcaccggtgtgtaaaaacatgtaaaattgtaaagcatccttgggtttctagaaaggcgctatctaagttgaacttcattcattctaCTGTCCAACTCATTCTATCCAAAAGTAATGGATGGAACTTCATTATTCCAAAATAGGGCTGTTGTATTTAGAAAGACCAGAAAatcagaaagagtgagatacaagagagagagagacagagagagcgagatagttacagagagagagagagagaaagacagagagaatacagagagagaatagtaatagagagagaaataggagTGATGATAAAGGGGTTTTTGAGATTGGTTAACTCTCGCTGGGAGGATTACGCCTGCGCGTTGGTGCCGTTCTTGTCGGGCGAGTTGGTGGCGTTGATGGAGTTGGCCAGCCCGTCCGGCTGCTTCCCGTCTTTGCGCGGCGGCATCCTCTCGTTTATCCGGTCCAGACCGCGCGCCTCCTCGAAGCTCTGGATCTTGTGCTGAGGGTTGAAACCTTGGATGGCTGGAGAGAGAAACAGGCAGAAAAGCAGAGGATTAGCTTTAGCATATGCTAAAGGCTAACGGCTATGCTAACGCTAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU240022 lncRNA upstream 72662 18175476 ~ 18176766 (+) True G177215
TU240017 lncRNA upstream 74910 18170425 ~ 18174518 (+) False xpo7
TU240005 lncRNA upstream 144315 18103086 ~ 18105113 (+) True G177203
TU240002 lncRNA upstream 151241 18097911 ~ 18098187 (+) True G177201
TU239999 lncRNA upstream 168708 18080009 ~ 18080720 (+) True G177198
TU240054 lncRNA downstream 49037 18307892 ~ 18309648 (+) True G177240
TU240077 lncRNA downstream 146158 18405013 ~ 18464234 (+) True G177257
TU240089 lncRNA downstream 200203 18459058 ~ 18466032 (+) True LOC111195058
XR_002651449.1 lncRNA downstream 203016 18461871 ~ 18466201 (+) False LOC111195058
TU240103 lncRNA downstream 211081 18469936 ~ 18472897 (+) True G177274
XM_007254937.3 mRNA upstream 36610 18181740 ~ 18212818 (+) True LOC103045166
XM_007254938.2 mRNA upstream 36610 18187057 ~ 18212818 (+) False LOC103045166
XM_007254936.3 mRNA upstream 36610 18187058 ~ 18212818 (+) False LOC103045166
XM_007254931.3 mRNA upstream 77693 18138712 ~ 18171735 (+) True xpo7
XM_007254932.3 mRNA upstream 77693 18138712 ~ 18171735 (+) False xpo7
XM_007254945.3 mRNA downstream 66018 18324873 ~ 18330489 (+) True LOC103047412
XM_007254947.3 mRNA downstream 72826 18331681 ~ 18337181 (+) False LOC103021446
XM_015607275.2 mRNA downstream 73044 18331899 ~ 18337181 (+) True LOC103021446
XM_007254946.3 mRNA downstream 80006 18338861 ~ 18347330 (+) True LOC103047729
XM_007254956.3 mRNA downstream 266010 18524865 ~ 18537048 (+) True letm2
TU240029 other upstream 23295 18224273 ~ 18226133 (+) False G177219
TU240030 other upstream 23295 18224273 ~ 18226133 (+) True G177219
TU239536 other upstream 1202439 17042835 ~ 17046989 (+) True G176882
TU239485 other upstream 1425111 16820959 ~ 16824317 (+) False fam136a
trnal-uag_3 other upstream 3322019 14927328 ~ 14927409 (+) True trnal-uag_3
XR_002651448.1 other downstream 66018 18324873 ~ 18330489 (+) False LOC103047412
TU240134 other downstream 281043 18539898 ~ 18543997 (+) False LOC103024155
TU240867 other downstream 1461446 19720301 ~ 19722389 (+) False LOC111194983
XR_002651455.1 other downstream 1492087 19750942 ~ 19775791 (+) False LOC103042206
TU241050 other downstream 1830406 20089261 ~ 20093862 (+) False LOC103043854

Expression Profile