RNA id: TU240125


Basic Information

Item Value
RNA id TU240125
length 634
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G177289
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18507224 ~ 18568326 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgtcatttaaagggttaaaattctgaaaattatttaatgtttggtaGTTTTGAGTAGGTCTGAAATTGATTAAgtgatttatgaaaaaaaagcaaaaaaaaatattgatgtataATGATTTAAGAGCAGTTTTTTGGTGCGTGTACATTTTTGCCACGAAGGTGTCCAGAGGGTGCAAAATGCATCCAGAGAGTATGAATGACGTGTAAGAGTAAAAGACAATAGATTTCaaaaatttaatgaaaaagCAGATTTTCTGCAAAAATTCATGCCACTAGCTGCAACATAGCCAAAATGATcaccaaatgaaaaaaaaaagttgaaaaaaatgtacaaaaatgccCGAGGAGGGCATAAGGGTTAAAATGCACAACCTCAGCAACAATAAAGGACTCTGACCTCTGGTGATTGGACCATGGttctctcctcttcctccacctGCTTGGGCAAAGGCTCCACCTTCACTTTGGGCAGCTGCCAGTCGCATTTAATGATCTCCACATTGAGCTTCTTCATGGTGATTGAGAGTGGGAGGAGCTTGCGGGCTGCGGCAGTCTTCCAGGGGGTCCGGACCGGCGGGGGCGACGGCTCCCGGGGGCTTGGTGTGCTTTCTTCAGGACTTGGAGGCTCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240114 lncRNA upstream 16953 18493006 ~ 18494787 (+) True G177282
TU240111 lncRNA upstream 21134 18485707 ~ 18490606 (+) True G177279
TU240116 lncRNA upstream 29639 18480504 ~ 18482101 (+) True G177283
TU240103 lncRNA upstream 38843 18469936 ~ 18472897 (+) True G177274
XR_002651449.1 lncRNA upstream 45539 18461871 ~ 18466201 (+) False LOC111195058
TU240113 lncRNA downstream 467 18513564 ~ 18515921 (+) True G177281
TU240123 lncRNA downstream 52482 18565579 ~ 18568326 (+) True G177289
TU240150 lncRNA downstream 91447 18604544 ~ 18609129 (+) True G177298
TU240151 lncRNA downstream 91447 18604544 ~ 18605074 (+) False G177298
TU240152 lncRNA downstream 91447 18604544 ~ 18609129 (+) False G177298
XM_007254946.3 mRNA upstream 164410 18338861 ~ 18347330 (+) True LOC103047729
XM_007254947.3 mRNA upstream 174559 18331681 ~ 18337181 (+) False LOC103021446
XM_015607275.2 mRNA upstream 174559 18331899 ~ 18337181 (+) True LOC103021446
XM_007254945.3 mRNA upstream 181251 18324873 ~ 18330489 (+) True LOC103047412
XM_022680714.1 mRNA upstream 259040 18236297 ~ 18252700 (+) True LOC103044456
XM_007254956.3 mRNA downstream 11768 18524865 ~ 18537048 (+) True letm2
XM_022680716.1 mRNA downstream 27017 18540114 ~ 18558444 (+) True LOC103024155
XM_022681174.1 mRNA downstream 47242 18560339 ~ 18563776 (+) False LOC103044763
XM_022681173.1 mRNA downstream 47243 18560340 ~ 18563776 (+) True LOC103044763
XM_007254966.3 mRNA downstream 125821 18638918 ~ 18645170 (+) True LOC103027413
XR_002651448.1 other upstream 181251 18324873 ~ 18330489 (+) False LOC103047412
TU240029 other upstream 285607 18224273 ~ 18226133 (+) False G177219
TU240030 other upstream 285607 18224273 ~ 18226133 (+) True G177219
TU239536 other upstream 1464751 17042835 ~ 17046989 (+) True G176882
TU239485 other upstream 1687423 16820959 ~ 16824317 (+) False fam136a
TU240134 other downstream 26801 18539898 ~ 18543997 (+) False LOC103024155
TU240867 other downstream 1207204 19720301 ~ 19722389 (+) False LOC111194983
XR_002651455.1 other downstream 1237845 19750942 ~ 19775791 (+) False LOC103042206
TU241050 other downstream 1576164 20089261 ~ 20093862 (+) False LOC103043854
TU241070 other downstream 1625725 20138822 ~ 20139564 (+) True G177950

Expression Profile