RNA id: TU240152


Basic Information

Item Value
RNA id TU240152
length 1395
lncRNA type inter_gene
GC content 0.51
exon number 7
gene id G177298
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18604544 ~ 18609129 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCATTACAAAAAGATTTTATTAGAGGGCAACAGAATGAAGAGTCCAATTAGCATATTTACAGACAGACAATTATCTACATATTGGAATGAGAGGAATAAACAGAGTGCTTGTAGGCAGAGGGGAAGAGGGAGAAGGGCTTCTATAGACTGCACCTGAGCACACAATCCACCGTATTACTGCCCCCGGTAAAGACCCTGCAGCCCGTGGGTAATGATGGGAGTTGCTGGGTCATATCTCCAGGATTCTCGTGGTTTGAACAGTCAGTGTTGCGTGGGCTCTAGACATGTGAACCAGCGCTGAGTAAAACACCCCAGAAGCTCTGCAGACAAGTTCTGAATCACAGAGCTGGAGCATCTTCAGTTTCCGAGTGGACGGTTTAGGACGACTCCTCGTCGATCTTGGGAGCCAGGTAGTATTTTACATGACCCATATCTGCGATCTTGTACTCCACCAAGAGGAATGTCTGCAGACATGCTAAGTGTGACTGTTTTGGACAGGGGTGTGGCCTTGGTGAAGAAGTTGAGGTAGTTCAGAGCAAAAATCAGCTGTACTGGTTCATTCATCTCAATAGTCAcAGCCTCTTCCTCCTTGTCTACATTGCTGGTCTGGGACAGTTTGATGTTGCCGGTGCCGAGCTCACCGCTGGCGGAGAACTTCACTCCATCTTTGGCGCAGGAGATCATGACGGCATCTCCGATCTGTGACAGGTCTCTGCAGATACGGGCGAACTCTCCTGAGGGCATCTTCACCACACAGCTGTACTCCTGCTCTGGAATTCCAAGCTGCTCCACATCCAAGTCCATCAGCTTCATTTCATAATCAGAGACTTTCTCCTGATTGAGCGTCTCAAACACCAGAGCCAGAGAGTCAGCGTTGTCCTCCGCCCGCAGAGTAATGATGTCCTCATTTCCAGCACACTTCAGGATCTTTGACATACTGCTGAGGTTGACCCCCATGGCGAGGTTCCTGTCGCAGCGGTAGGAGTCGAAGCCGTCGCTGCGGAGGGTGAGCTGCACCAGAGACACGTGGGACGAGTCCATGCTCTGCAGGGAGATCCCGGAGGAGCTCACGTCCCAGCAGGCCTCGGTGATCAGGTCCTTCAGAGCCTCCAGCACCTTCTTCAGGATGGAGCCCTGCACAAGTCTTGCCTCGAACATCGTGctgtttgtttggttgtttaCGGACACAGAGGAAAAATAAGAGCAGCTCCCTGTAGCTTCAGTTAGTGCTTATAAAAATCAGAGCAGCAGATCTGATTTATCAGCTACAATCAATATAAATGATCTACTAAGAGCTGAACAAAGTTCGAGAGGATGCTGTCAGTCCTCCTGCTCCACGAGGCTCCGAAAGTGCGTCTCCTGCGCGCGCTTTCCGTGCACTTTTGATGGCTGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240123 lncRNA upstream 36218 18565579 ~ 18568326 (+) True G177289
TU240113 lncRNA upstream 88623 18513564 ~ 18515921 (+) True G177281
TU240126 lncRNA upstream 91447 18507224 ~ 18513097 (+) False G177289
TU240125 lncRNA upstream 91447 18511740 ~ 18513097 (+) False G177289
TU240114 lncRNA upstream 109757 18493006 ~ 18494787 (+) True G177282
TU240154 lncRNA downstream 36498 18645627 ~ 18648103 (+) True G177300
TU240171 lncRNA downstream 39634 18648763 ~ 18651539 (+) True G177314
TU240186 lncRNA downstream 91863 18700992 ~ 18701689 (+) True G177324
TU240187 lncRNA downstream 92284 18701413 ~ 18701689 (+) False G177324
TU240232 lncRNA downstream 236566 18845695 ~ 18847305 (+) True G177349
XM_022681174.1 mRNA upstream 40768 18560339 ~ 18563776 (+) False LOC103044763
XM_022681173.1 mRNA upstream 40768 18560340 ~ 18563776 (+) True LOC103044763
XM_022680716.1 mRNA upstream 46100 18540114 ~ 18558444 (+) True LOC103024155
XM_007254956.3 mRNA upstream 67496 18524865 ~ 18537048 (+) True letm2
XM_007254946.3 mRNA upstream 257214 18338861 ~ 18347330 (+) True LOC103047729
XM_007254966.3 mRNA downstream 29789 18638918 ~ 18645170 (+) True LOC103027413
XM_007255028.3 mRNA downstream 81803 18690932 ~ 18738736 (+) True LOC103045675
XM_007254967.3 mRNA downstream 183240 18792369 ~ 18806551 (+) True anxa4
XM_007254968.3 mRNA downstream 208783 18817912 ~ 18829242 (+) True LOC103028061
XM_007255030.2 mRNA downstream 226687 18835816 ~ 18840424 (+) True LOC103046295
TU240134 other upstream 60547 18539898 ~ 18543997 (+) False LOC103024155
XR_002651448.1 other upstream 274055 18324873 ~ 18330489 (+) False LOC103047412
TU240029 other upstream 378411 18224273 ~ 18226133 (+) False G177219
TU240030 other upstream 378411 18224273 ~ 18226133 (+) True G177219
TU239536 other upstream 1557555 17042835 ~ 17046989 (+) True G176882
TU240867 other downstream 1111172 19720301 ~ 19722389 (+) False LOC111194983
XR_002651455.1 other downstream 1141813 19750942 ~ 19775791 (+) False LOC103042206
TU241050 other downstream 1480132 20089261 ~ 20093862 (+) False LOC103043854
TU241070 other downstream 1529693 20138822 ~ 20139564 (+) True G177950
TU241506 other downstream 3640015 22249144 ~ 22301065 (+) False LOC103046694

Expression Profile