RNA id: TU240298


Basic Information

Item Value
RNA id TU240298
length 556
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G177401
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19043707 ~ 19045097 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCTTTAGGGTCCCCATTGGCTTTAGGGTCCCCATTAGCTTCAGGGCACCCAGCGGCTTTAGGGTCCTCAACAGCTGTAGAGTTCCCAACAGCTTTAAAGTCCGCCACAGCTTTAGAGTCCCCAAGGGCTTTAGAGTTTGCCATGACTTTAGGGTCCACCACAGCTTTAGAATACACCACAGCTTTAGAGTCCGCCCTGGCTTTAGGGTCCCCAACAGCTTTAAAGTCCCCACTGGCTTTAGGGTCCCCACTAGCTTTAGGGTTTTCAATGAGTTTAGGTCCCCTGCAGTTGTAGAGTCCACCATCACTGATTTACTGCTGTCCTCTGAGTCACTAAGCGAAAACCTTACTGTGTGTGGTGGGTGTGTAGGTTGTGATGAGGAGGTTGCAGAGTGTGTGGaatgtgtatggtgtgtgttcGGACTGGACTGAAGTGACCGCTCAGTCTCCATTAGCACCTCACTGGACTCGCCCACATCTGCCCGCAGTTCAGAGACAGGACTGCAGTGCAGAGACTCTGAACCTGAAAAACAGAGATTACAGTTCTACACCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240291 lncRNA upstream 1521 19041135 ~ 19042186 (+) True G177397
TU240286 lncRNA upstream 26987 19015385 ~ 19016720 (+) True G177392
TU240232 lncRNA upstream 196402 18845695 ~ 18847305 (+) True G177349
TU240186 lncRNA upstream 342018 18700992 ~ 18701689 (+) True G177324
TU240299 lncRNA downstream 918 19045180 ~ 19046232 (+) True G177402
TU240314 lncRNA downstream 3755 19048017 ~ 19048370 (+) True G177414
TU240311 lncRNA downstream 31105 19075367 ~ 19078352 (+) True G177411
TU240352 lncRNA downstream 126811 19171073 ~ 19171523 (+) True G177439
TU240357 lncRNA downstream 136849 19181111 ~ 19181650 (+) True G177443
XM_022681188.1 mRNA upstream 6034 19033060 ~ 19037673 (+) True ess2
XM_007254978.3 mRNA upstream 6034 19033060 ~ 19037673 (+) False ess2
XM_007255032.3 mRNA upstream 12907 19010873 ~ 19030800 (+) True LOC103046910
XM_022681186.1 mRNA upstream 59423 18956694 ~ 18984284 (+) True LOC103046599
XM_007255030.2 mRNA upstream 203283 18835816 ~ 18840424 (+) True LOC103046295
XM_007254979.3 mRNA downstream 4665 19048927 ~ 19052826 (+) True LOC103031227
XM_007254982.3 mRNA downstream 12769 19057031 ~ 19062255 (+) True tmem120b
XM_007254983.3 mRNA downstream 35526 19079788 ~ 19099415 (+) True setd1b
XM_007254984.3 mRNA downstream 35526 19079788 ~ 19099415 (+) False setd1b
XM_007254985.3 mRNA downstream 35526 19079788 ~ 19099415 (+) False setd1b
TU240134 other upstream 499710 18539898 ~ 18543997 (+) False LOC103024155
XR_002651448.1 other upstream 713218 18324873 ~ 18330489 (+) False LOC103047412
TU240029 other upstream 817574 18224273 ~ 18226133 (+) False G177219
TU240030 other upstream 817574 18224273 ~ 18226133 (+) True G177219
TU239536 other upstream 1996718 17042835 ~ 17046989 (+) True G176882
TU240867 other downstream 676039 19720301 ~ 19722389 (+) False LOC111194983
XR_002651455.1 other downstream 706680 19750942 ~ 19775791 (+) False LOC103042206
TU241050 other downstream 1044999 20089261 ~ 20093862 (+) False LOC103043854
TU241070 other downstream 1094560 20138822 ~ 20139564 (+) True G177950
TU241506 other downstream 3204882 22249144 ~ 22301065 (+) False LOC103046694

Expression Profile