RNA id: XM_022680715.1



Basic Information


Item Value
RNA id XM_022680715.1
length 9190
RNA type mRNA
GC content 0.47
exon number 19
gene id nsd3
representative True

Chromosome Information


Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18485642 ~ 18531635 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GGCGCTGAGCGCAGGGGGGGGCTTTTGTTGGAGCCGTGGAGACACACAGCACAGGCTGGAATTAAATATATGGCAGACAGATTTCCCCCCGGTCTGCAAAACCCCGCAGATAAACACAGGAACAGAGGGAAAAGCGGGAACGGCGGAGCGGGGCCTGTCCCGATCCCACAGCCTGCAGCTTTCCCAGCGTGGAGACCCGGAGCGCGGACTGAGCTAGCCCCGCTTATCGCCAGCCGAATAGCGCTGTAGAAACAAACGCTGTTTATTCAGCTTGTTTACCCTTTGTGTgcttatatatacacatatatacatatatatatcggTGTAAAGatttgttatatatgtgtatatagtgATATTTACGTTCACTGCCTCTGGAGTCACGTTATTTCGCTGTATTTGTTTAGGATGGAACACGCTGAAGACCCTGTAAGAAAAAGGGAAACTTAAAGGATGCTGGAGCAGAACAATGgatttctccttctctttcatgCAAGGGATCATGGGAAACACAATTCAGCAACCCCCTCAGCTCATTGACTCGGCCAACATCAGACAGGAGGACGTATACGATGCCATCAGTGAACCAGGGGACGAGGGCGGACCCCCCACGTACGAATCTCCGCTGGAGTCCGGTTTCTCCTACCCTCCTGAAGACCTGCCCGTGGTCGCCAACGGCTACCCGACGGGGATCGGCACTTATGAGCACCAGGCCAAGTTCGCCCTGTACTCGCAGTACCCCAACGGCTCGGCCAATGGCTACGGTGCCATCCGCAACTACAGTGACCACGGCCTGCTGCTCGGCGAGGGAACCGTGCTGAGAACGCCGGTGGTCCAGGAGAAGCCGTCATCACACATCtcctctcctccacctccaGCTCACTCCCACCTTCATCACCAGCCTCATCCTGCTCACACTCACCCTCACCATCAGCACCAACAGCAGcaccatcagcatcagcagcaccaTCACCCGCCCAACCCGCAGCTCATACCtcagcagcaccaccaccaccaccctcctcatcctcctgcCCAGTCCTCGCACCTCCTTCCTTCTGTTTTCCCTCCTCCGCCTCCTCTGCTCCTCCCCACCTCTCCTCCCCCTCAACCCGTCCACAACACCAACGCCGCCGCCTCCCACCCCCTCGCACACCACTCCGCCGTTGTCACCCCGAGAAAGACGGAAAAAAGCTCCCCAGAAATCAAGATCAAAATCATCAAGACGTACCAGAACGGCCGGGAGCTGTTTGAGTCATCGCTGTGCGGGGACCTGCTACAGGAGTTCCAGGCCAACCAGACGTCCCCCAGGAGGCACGagcagaagaaggagaagagaaaaaaacgaAGCGGGCGACAGGCTGCTGCTCTCGGCGTTGCCGCCGCCGCAGTCGCCTTTCCCGAGCAGGTCGAGCAGGACAGAACGGACCAAATCCCCGGCCCACCTCAGCTCAGCGAGGGGCACAGCGTGTTGCAGGAACCGCAACCTGTGGTGACCATCAGGAGCCCAAACGCAGAACCCAAGGAACTCAAGgtgGAGAAGCACTTCCCGTCGGTCATCACCAGcacaggagtgtgtgtggagtacGAGATCGGGGACCTGGTGTGGGCTAAAGTGGGAACGTTTCCATGGTGGCCCTGCATGGTCTCCTCAGACCCCCAGCTGAAGGTCCACATTCGCATTAACACCAGAGGTCACAGAGAGTACCACGTTCAGTTTTTCGGCAGTGTGGCGGAGCGGGCATGGATCCATGAGAAAAGGATTGTGGTTTATAAGGGAGCGAGTCAGTTTGAGGAACTTCAGGCAGAAACACTTCGCAAAACCACCAACCCCACTGAGAGGCAGAAGctgctgaagcctcaGTCTCAGCATGAGCGTGCTCAGTGGGAGGTGGGTGTCGGCCACGCGGAGTCGGCGCTGCTAATGTCCCGCGAGGAACGCAACGAGAATTACACCTTCATCTATATCGACAAGCAGCCCGGCGACGAGCCCGAGCCTGTCTCCTCCCCCACCACCAAGACCAAAAAGCTGGCCCGGCCCGAGCGTCGCGCCCGCCGCTCCCGCAGCGCTAGGGAGGAAGTGCTGCCACGGCGACAACAGCCCCGCCGCCAGTGCAGCATCACCAGCGCCGAGGAGCACAGCTCATCCAATCAGGCGGATGCGGACGACTCGGACCACAGTCATGAAGATGAGCCTCCAAGTCCTGAAGAAAGCACACCAAGCCCCCGGGAGCCGTCGCCCCCGCCGGTCCGGACCCCCTGGAAGACTGCCGCAGCCCGCAAGCTCCTCCCACTCTCAATCACCATGAAGAAGCTCAATGTGGAGATCATTAAATGCGACTGGCAGCTGCCCAAAGTGAAGGTGGAGCCTTTGCCCAAGCaggtggaggaagaggagagaaCCATGGTCCAATCACCAGAGGGCTCGAGTGATAAAGCGGAGGCGTGCTCCAGTGAAGAGGAGCGAGCAGCTTCACCCACAACCTGGAGCGACCCGGAGAGTGGAGAACACGCAtctacaggtacacacgtgtgtgAGGTGTTTGGGGACTCCCTGCTGAGCTGTGAGGGAGACTGTAACAGACTGTTTCACCCCGAGTGTCTGACCTCCGCCGGCGGGACAGAGGGAGAGACCATCTGCACCGAGTGCAGGACAGGTCTGACTAATAAccaacactatttttattattattattattattattatcaccTCTGCTCGCCCGTAAACGTAGGCTGGTGTTTCATATGCGCCCGAGGGCTCTTAGTGCACGACCACACTGACACCGTATTAAGTTCTTATACCTTTAAGTCTCACTACCTTCTGACTGAGTCAAATCGTGCTGAGTTGATGAAATTACCTATGATTCCTTCTTCTTCGTCAGCTACCAAAAAGAATGTCGGAAAAGgaGGAAGACTGCTGTGTTGTGAAGCATGCCCTGCCTCCTTCCACCCCTCCTGCCTGAACATTGAGATGCCGGAGGGGGTGTGGCTTTGCAGTGAGTGCAGGGCGGGCAAGAAACCCCACTACAAACAGATCGTCTGGGTCAAACTGGGCAACTACAGGTGGTGGCCTGCTGAAATCTGCAACCCTCGTCTGGTTCCGTCTAACATCCAAAGTCTGAAACACGATGTTGGAGACTTTCCTGTCTTCTTCTTCGGTTCTCACGACTACTACTGGATCCACCAGGGCCGGGTGTTCCCGTATGTGGAGAGCGACAAGAACTTTGCTGAGGGACAAGTCGGCATTAACAAGACCTTTAAGAAGGctCTTGAGGAGGCAGCGAAGAGGTTCCAGGAGCTGAAGGCTCAGCGTGAGACAAAAGAAGCTCTGGAACAGGAGAGGAACTCCCGCAGACCTCCACCATACAAACTCATTAAGGCCAATAAGCCGGTTGGGAAGGTGCAGGTCCATGTGGCCGATCTGTCAGAAGTCCCTCGCTGTAACTGCAGGCCGACAGACGAGCGGCCGTGTGGGCAGGACTCGCAGTGTTTGAACCGCATGCTGCAGTACGAGTGCCACCCCCAGGTGTGTCCGGCCGCCGAGCGCTGCCTCAACCAAAGCTTCTCCAAACGCGTCTACCCCGACACCGAGGTCATCAAAACCAGCGGCCGAGGGTGGGGCCTCAAAACCAAACAGGACCTGAAGAAGGGAGATTTTATAATGGAATACGTCGGAGAGCTGATTGACTTGGAAGAGTGTCGTCAGCGAATAAGCCACGCAAACAAGAACCACATAACCAACTTTTACATGCTGACCCTCACCAAggatCGTGTGATAGACGCTGGACCCAAAGGAAATCTCTCTCGCTTCATGAACCACAGCTGCAGCCCTAACTGTGAGACGCAGAAGTGGACTGTGAACGGGGATATTCGCATTGGCCTCTTCACACTATGTGACATCGCAGCGGaTACTGAGCTGACGTTTAACTATAACCTGGATTGTCTGGGGAACGGGAGGACGTCGTGCCACTGCGGGGCTGAAAACTGCAGCGGCTTCCTGGGAGTTCGGCCCAAGAGCGCGGTGGTGATGGAGAGGGAAGAGAAGGTGAAGAACTCCAAGCTGAAGGCCAAGAAGCGTAAGCTGAAGCTGGAGAGCAGACAAACCCACGAGTATTACTGCTTCTGCTGCGGCGAGGGCGGCGAGCTCGTCATGTGCGACAGGAAGGACTGCCCTAAAGCCTATCACCTGCTCTGCCTCAACCTCACCAAGCCTCCCTATGgtcgCTGGGAGTGCCCGTGGCACCAGTGCAGTGTATGCCAGCGCCCTGCCTCTGCTTCCTGCCAGTTCTGCCCCGAATCGTTCTGCCGTGAACACGAGGCGGGTCAGCTGAAGGTCTCGGCCCAAGACGGCCTACCCTGCTGCTCGAAACACGACCCAGCCCAAACCGGCCAGGCCCGAGTGAAACAGGAGCAACCAGAGCCCGgagaggaggaggcggaggaggaggaagaggaggagttaGAATCGGGAGGCGGAGCTAAAGgtggagataaagagaaagggGGAGGAGGAAAGGGAGAGGACGTGCGCAAGTAACTGAGCATGagactaaaaaaacaaacccgGTGACTGGagataaaatgaaagaaacaaaaaaaacataccctCCAAGCAGCCAGGGGCCGCTGTGATCGATCAGAAATCAAATAGATACAAGTGTTATTTGTTATCCATTCCAGGTGTGCTGCGGCAGCTGGCGCTTTTTTGAGCCGTGACGTCACGGTTTTACGACATAGCTTCTTTGGAAACAGCACGTTATGGGTCGGCGGATGGACACAGGATGGGGGATCAACTAAACGTCActttaccaatgtttttttttttctttcttgggCCGTATGGGAAGCCTCGAGGCTTTTAAACCACGGCAGCTCGGTTTCAATCCCGACACGGTACCTGCATCACACTCCAGAACTCCAGACTCGATTTTATGTACCTCATGTAAATAGAAAGGATTCCGCGTAGGACGAGACGCGTAGTTCCTCAAAAAAAACGCAAGGAAGGAGTTCGCTGCAAATTCCGAAGTCAGCTGACTGGGAGCGGTACTGTTTGACAAAGGAAGACAAAAACAGACCGGACTGGATGTGGCTGAGGTTTGGTTACGTGCTGCCACTTCATACCCGTGTGTTTGTGATTTGTAagatatatatcattattaatatatttatgacTATGTTTACATCCACTCACAAGTGTACAGTATTGTTCATTGGTATTAGTGAGTTTGATATAACTATTCTTAATGTTGTAAATGTGCCCTTTTTGTCAGCGAAATGATGATTAGCCTTCTTCATCGCTTGGCCTTCTtcctttttctgttgtttttgcgccactttctctctctctcacactctgtatttctcttttcGTAAGATAATGTTCAGAATTCACACCGCATATATTACAAATCATGATCTACAGTAATGCTCAAACACGGCTAGCACTTGTTCAcatctttacattttacactttatCTTCTTGCCTGAGATACGAGGTTTCTTCAGTGTTATTACCAGCTTTACCAGCGAAAATGCGAAACCTCGTAACAAATCAAAACTTAGTAACATGGAAACCTCGATCTGGCCATCGCAGATAATAACCCGAACACTGCCATCTTGCCAAATTTCGCCGTCGTTAGTATTGTGCCAATATGAGTATCCCGTAGGAAATGGTTTGTTTCATTTGAGCACTGCTGTACGATGTAATTTACACATTTAGCGCATTAACGCGTTAAATGTTGTGTTTCTTACGGACGTGTTTGTAAATACGATctctgtttagtttattttcggTGGCGTTGTAATCATCTCTTGTATCATCATGCATATTGTACAATAGTGACGACATTTTGCCGCTTTCATGTTCGAAGCGTGCCGTACGTAATTTCCCAGAGCTCATTTTTTAGTCTCAAACGGTCAGTGTTTTTGTACCACATTTTGTCTTAATGACGTAATGCAGAAAACTGTTGCTAAAGGAGAAAAGGGAGATCTCTGAAATCTTTGGACGTGACCTGGATTTCGGAGTTGCGTGGTCTGCGGCAGAGTGTAGCATAAACCTGGATAACGTAATTTCTACTTCTCGATGTAAATCTGAGTGATAATTAAAACCTCCATAGCGGCGGCGGTGTTCCCCCTGCTCAGCGTAACGGTGTCGTGACTCCGCGCTCGGTAGATCTGTGATGTGCAGTACTGTGCTTGAGAACTCGTTCATCTCTCTTTAGGCTGCGTTTACCAAACAGCAGTAGAAGCACTTCACTAATTTCTGACTCATTTCACCCTCGTCTCCTCCCAGGACTGTGTGAGGTACTGTGTGCGCTGTATTCATGCAACCCGAGCCTcagtgtgacttttttttttttcttttcctaatcatgttacaatttttttttcagtattccTCTTTAAACCCTCTTATAAATAATCCGGGCCACATTTATTGTTCCCtaaagaggtttttaattaattaagaaaagctgcttttatttacttaaaaatagaGATTTATTAATACAAAAGGactgttttattcttttagtTTCCACAGAGAATCTTAGTATTACAGATTATCttcacataataaaaaaaagctcagtttaaaaCTCACTATTTAAACTATGTTAGAGTCAGCTCAGAATTTGTGCCCAATATGCCATACTAAAGAAGGTTTAATTTTAACCAGAGGGGGcgacaaaaacactttttaacctGCAATTAGAAAGCTATTATAATGGTATTAACAACTTTTATAAAATGAATCAGCAACTGCTGTGCTGCTTATGATGTTTCATTAAAACCTGAAAGGAAAAATTGGCAAACATACgtcattaaatatataacatttattttttaaaaaagcacagaATTATGCCAGATTTGTGTCTGGTATCTCCCACTGGGGCAGTTTTCTTGTTCACCAGAGGGGGcgacaaaaacacaatttaatagttacattttataaaatataaaatacaaataaatgaattttgCCATTCTCCAAATCTGCAAACCTTTtcattataaatatgaatttaaataaaattcgaaaaattagcaaaaaatctattgatTTATACAGTTTTACCCAAAGCATCTTAGTATTACAGATCGTGTTGActggtaaagagagagagagagagagagagagagagaaagtgagtgttTAGTGTGATGATTGCTTAACCATTTGTGCCCAGCATGTCTTACTGTGGCAGTTTTAATGTTCACCAGAGGGGGTGTCAAAGGCACCCTTTAAGTACAATTATCAAATATGAAATACAAAGTTAATTTTAGACAATTTTGCCACTTTTCAAAACTGTAAACTTCCACAACactattaaaatgataaaagtcTAAATAAACTAGTATTACTCCCAGAAGACCATAGTGTGGTTCGATATCAGTTGTAGCCGCTTCCTCCTAAAATTGGGCCAAGAACccattttcattattattattattattattattattataattattaagaGTGGAAACGGTCCAGCTCTAAAGTTTATCACACTGTGTTCATCAATGGGAGACAAACATGTTGCCAGTTTTGAGTTTATTTGAATCACTTTTtccttgttttgttcttttttttatgtatacatCTGTTTAATGTTGGATGCATGTAGGTGAAGTGTGCATCCACATTTCTGCCAAACCGAAGCTTTTATTCACCATGTATTACTTTCTACCGTTATCTGTGCGCTGTTTCTACCATCCCAATCTGCATTTTGTTATGTTTAAAAGGGGAACTCCACCAAAATTAAATTCCTAAATAATTCCGTTTCACATGAACTTTgaattcagagtgggggtttgagattatgTATTTGTAACAGGTGATTGTACAATAGTGTAAcatctgaacttttttttggctcaccACGCCTCATGTTGTATTCCTTCACCATTTCAATGATATGCaattttaaaaacaagttttaaagcCAAAATATTCTTAGAACTCTGAGAAAGCAGTGTGTTGGGTAACAAGCAGTGTATTTATAACCATTTACTGTAATAACTTTCAATGGGGACGGGGCTTAGAACTTAGACGTTACATCTGATTATCTAGAATGAGGAGATTAATGAGCCACTGACTGCAATATGAATAAGATTTTTCTTGTAACCCTATTCATGGTGCCTGTTTATGGATAAAATCCTGTCCTTTatcaaaaacagccaatcagcttgctggttgtgGCAAAAGCAgaggagatctgtgcaagtgcaGCAGAAACACATTTTAGTGCATTTTTAAGTGAAACGCTACAAACTAATCATGAGgttttataatatttgtatctgggattttaaatatgtttttgacCTTTAGTTTCCAGTATTTTGACTGAGAAAACTGACTTTTGTATAAGAAGTTTGCACCAAACCTACTCTGAATGTTCATAATGTCAACCATTTCATTGTGGTGGAATTTAGCAATTTTAGTGGAGTTCCTCTTTAAAAATGAAGCGCTGTTTAAGTCTCATgcacttttccttttttgtgttCTGTTATGTTGGCCTTAACAATGATTTTACTCTCATGTACGATATTTGTAAACTTTTTTATCATCATTTAGCACTTTCCTCCACTTTTTTTCTAAAGACCAATGTGTTCttcatgtatgtgtgtatgtatgtatgtatgtgaatgatgtgtatgtgtggtaACGGTTCGTCCGTGTGGGAGGAACGCTCAGAGGCGGCGGCAGAACGTTTCACCATGTACGGTGGTGTCGTCGTTCGGTTGTGGTGCGTTCCTCTGGGAGAGAGTTCTGCTTTGGTATCCCAGCATGTAATACTCCAACCTCTACAGGCTCCGCCCTGACTCGTcgctgtttatttctttattttatatatattttttggactgaTGCACAATAATgccttgtttattttctgttttttgcttttatttcatgtttattcCACAGTTAGTCGTAGTATTTCTGATATTTCTGAAATGCAGTTCTTTGTTACTCGTGCGGTGGCTCTCTTTTATTGTTTCATTAGAATTATATACGAAATGTCGTACATTTCAGGAGCCCCTTTTTATTTCTGCCATATCAGCTGTTTAACGTTTTGTATACCTCCTTAAAGCTGTTCCGAGTGTTAGTGCACTGTACTTCATCCTTTTTTATATGAATATGTGATTTAAAGTGTCATAAACATCTTGTGCTTATTCA

Function


GO:

id name namespace
GO:0032259 methylation biological_process
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG:

id description
K11425 WHSC1L1, NSD3; [histone H3]-lysine4 N-dimethyltransferase / [histone H3]-lysine27 N-dimethyltransferase

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU240507 lncRNA downstream 136988 18348298 ~ 18348654 (-) True G177559
TU240503 lncRNA downstream 146810 18338544 ~ 18338832 (-) True G177555
TU240489 lncRNA downstream 147176 18263803 ~ 18338466 (-) True G177546
TU240499 lncRNA downstream 157463 18324755 ~ 18328179 (-) True G177551
TU240488 lncRNA downstream 218135 18262603 ~ 18267507 (-) True G177545
TU240538 lncRNA upstream 13016 18534885 ~ 18537687 (-) True G177584
TU240543 lncRNA upstream 27141 18549010 ~ 18550867 (-) True G177589
TU240552 lncRNA upstream 39483 18561352 ~ 18565313 (-) True G177596
TU240560 lncRNA upstream 93023 18614892 ~ 18615995 (-) False LOC111195059
XR_002651450.1 lncRNA upstream 98330 18620199 ~ 18624721 (-) True LOC111195060
XM_007254953.3 mRNA downstream 3526 18474816 ~ 18482116 (-) False LOC103023096
XM_022681170.1 mRNA downstream 3527 18467256 ~ 18482115 (-) False LOC103023096
XM_022681167.1 mRNA downstream 3528 18459004 ~ 18482114 (-) True LOC103023096
XM_022681168.1 mRNA downstream 3528 18460809 ~ 18482114 (-) False LOC103023096
XM_022681169.1 mRNA downstream 3529 18459004 ~ 18482113 (-) False LOC103023096
XM_007254959.2 mRNA upstream 43832 18565701 ~ 18570062 (-) True LOC103025514
XM_007254961.3 mRNA upstream 49360 18571229 ~ 18577765 (-) False LOC103025819
XM_007254960.3 mRNA upstream 49360 18571229 ~ 18577765 (-) True LOC103025819
XM_007254963.3 mRNA upstream 57882 18579751 ~ 18595814 (-) False LOC103026456
XM_007254962.3 mRNA upstream 57882 18579751 ~ 18595814 (-) False LOC103026456
TU240520 other downstream 82634 18397582 ~ 18403008 (-) True G177568
TU240457 other downstream 311117 18171849 ~ 18174525 (-) True G177526
XR_002651445.1 other downstream 2694998 15780555 ~ 15790644 (-) False stoml2
TU238985 other downstream 2920179 15530986 ~ 15565463 (-) False LOC111194989
TU240722 other upstream 569277 19091146 ~ 19092146 (-) True G177704
XR_002651453.1 other upstream 597917 19119786 ~ 19128122 (-) False LOC103035567
TU241386 other upstream 2769653 21291522 ~ 21295833 (-) True G178173
TU241489 other upstream 3411650 21933519 ~ 21933831 (-) True G178267
TU241733 other upstream 3933628 22455497 ~ 22456779 (-) True G178426

Expression Profile