RNA id: TU240560


Basic Information

Item Value
RNA id TU240560
length 522
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC111195059
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18614892 ~ 18618612 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttttttttttttttaatgtggattTACAGTCCAAAACTTTTAACATAAACTACTTTTGACATTCaactagaaatgttaaatgtttgctCATGTTTTGATGAAGTGCTTTTGGCACTTTGCCTTTTGACCTAAGGGTGTACTCTGTGGAAAAGAGCCTTCGAAGTGGCTCAGCAGAATCCAGAAGGGATCATCTCTACGGGTGCCAGTGTACCTGGACTCGGAGGAAGAACAGGACTCCCTATTTTTCTATCTTCAGGATGTCCTGAAATCTGCACCAGTAGAATTCCACATTGAGGATCAAGTGCAGTTCATTTTGGATGTTTTGTTCCCAGAGTGCATCACCCAAGCCATGTCTACACTACAGGGAATAACTATACAAGAGGCTGAAGAGTTGTTTCTTTCAGGTCCTAACTACAGCAGAAGGTAAAAACAGTTACCTGTGTTTGAAATATCTGtatgaatgtttatttattgtgacTACCATTTTAATTGGGTGGGTGGTTGCGTGTTTGTGTCGGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240552 lncRNA downstream 49579 18561352 ~ 18565313 (-) True G177596
TU240543 lncRNA downstream 64025 18549010 ~ 18550867 (-) True G177589
TU240538 lncRNA downstream 77205 18534885 ~ 18537687 (-) True G177584
TU240523 lncRNA downstream 83257 18504398 ~ 18531635 (-) False nsd3
TU240507 lncRNA downstream 266238 18348298 ~ 18348654 (-) True G177559
XR_002651450.1 lncRNA upstream 4204 18620199 ~ 18624721 (-) True LOC111195060
TU240570 lncRNA upstream 10294 18626289 ~ 18626532 (-) True G177605
TU240572 lncRNA upstream 13304 18629299 ~ 18629554 (-) True G177607
TU240574 lncRNA upstream 16419 18632414 ~ 18632670 (-) True G177609
TU240612 lncRNA upstream 120869 18736864 ~ 18740579 (-) True G177626
XM_007254965.3 mRNA downstream 5759 18604544 ~ 18609133 (-) True pcna
XM_007254963.3 mRNA downstream 19078 18579751 ~ 18595814 (-) False LOC103026456
XM_007254962.3 mRNA downstream 19078 18579751 ~ 18595814 (-) False LOC103026456
XM_022681179.1 mRNA downstream 29800 18579751 ~ 18585092 (-) True LOC103026456
XM_007254961.3 mRNA downstream 37127 18571229 ~ 18577765 (-) False LOC103025819
XM_022680717.1 mRNA upstream 32791 18648786 ~ 18684766 (-) True LOC103045069
XM_007255027.3 mRNA upstream 70675 18686670 ~ 18691097 (-) True LOC103045381
XM_022680718.1 mRNA upstream 130253 18746248 ~ 18791052 (-) True LOC103045990
XM_007254969.3 mRNA upstream 225076 18841071 ~ 18847381 (-) True brf2
XM_022681182.1 mRNA upstream 225076 18841071 ~ 18846591 (-) False brf2
TU240520 other downstream 211884 18397582 ~ 18403008 (-) True G177568
TU240457 other downstream 440367 18171849 ~ 18174525 (-) True G177526
XR_002651445.1 other downstream 2824248 15780555 ~ 15790644 (-) False stoml2
TU238985 other downstream 3049429 15530986 ~ 15565463 (-) False LOC111194989
TU240722 other upstream 475151 19091146 ~ 19092146 (-) True G177704
XR_002651453.1 other upstream 503791 19119786 ~ 19128122 (-) False LOC103035567
TU241386 other upstream 2675527 21291522 ~ 21295833 (-) True G178173
TU241489 other upstream 3317524 21933519 ~ 21933831 (-) True G178267
TU241733 other upstream 3839502 22455497 ~ 22456779 (-) True G178426

Expression Profile