RNA id: TU240656


Basic Information

Item Value
RNA id TU240656
length 479
lncRNA type sense_over
GC content 0.36
exon number 2
gene id LOC103029522
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18887028 ~ 18934600 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCCTAAAGGATttgcagtgtaaataaatgaaatcacaGAAACCTGATCAGATAGGAAACGCCTAATAACTAGCATACTGTAAATTATTTGCAATGGAAAATGCTGGagaagttatttttatttatttatttttatgtttttattttttttacagtactgtgCTTTAATATGTTTGAGCTGCTGTGTGactcttattatataattactGTTAGTATTGTtgggacttttattctgtaacttTGCCATGATGATGAGAATCAGTGTGTTCTCCTGCATGAGACCCAAGTCCCTACTCACAGTACCGGTTCCGGTTCtgcactgttctgttctgtagtTCATTAACCAGCTcctccaaccacacacacacacctgtctgcttcctgagtgtgtgtatgagagaggtAGTGTATGTGTAACTCTGCATGCCAAAAATCTCAGTTTGTAGCAGAATTGAACTTTCAGTAAAGAGTTTTAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240636 lncRNA downstream 57743 18827603 ~ 18829287 (-) True G177644
TU240597 lncRNA downstream 88896 18743510 ~ 18798134 (-) True G177617
TU240612 lncRNA downstream 146451 18736864 ~ 18740579 (-) True G177626
TU240574 lncRNA downstream 254360 18632414 ~ 18632670 (-) True G177609
TU240572 lncRNA downstream 257476 18629299 ~ 18629554 (-) True G177607
TU240675 lncRNA upstream 16252 18950852 ~ 18954940 (-) False G177669
TU240676 lncRNA upstream 16252 18950852 ~ 18951751 (-) True G177669
TU240688 lncRNA upstream 49212 18983812 ~ 18987415 (-) True G177678
XR_002651452.1 lncRNA upstream 140647 19075247 ~ 19076916 (-) True LOC111195061
TU240704 lncRNA upstream 140775 19075375 ~ 19078334 (-) False G177688
XM_007254972.3 mRNA downstream 3859 18873117 ~ 18883171 (-) True LOC103029209
XM_015607293.2 mRNA downstream 3878 18873117 ~ 18883152 (-) False LOC103029209
XM_022681184.1 mRNA downstream 16889 18847995 ~ 18870141 (-) False LOC103028676
XM_022681183.1 mRNA downstream 16892 18847995 ~ 18870138 (-) True LOC103028676
XM_007254969.3 mRNA downstream 39649 18841071 ~ 18847381 (-) True brf2
XM_022681187.1 mRNA upstream 60274 18994874 ~ 19005861 (-) False LOC103029848
XM_007254974.3 mRNA upstream 60274 18994874 ~ 19005860 (-) True LOC103029848
XM_022681189.1 mRNA upstream 103710 19038310 ~ 19048336 (-) True LOC103030174
XM_007254980.3 mRNA upstream 118391 19052991 ~ 19056252 (-) True LOC103031534
XM_007254986.3 mRNA upstream 128950 19063550 ~ 19072529 (-) True rhof
TU240520 other downstream 484022 18397582 ~ 18403008 (-) True G177568
TU240457 other downstream 712505 18171849 ~ 18174525 (-) True G177526
XR_002651445.1 other downstream 3096386 15780555 ~ 15790644 (-) False stoml2
TU238985 other downstream 3321567 15530986 ~ 15565463 (-) False LOC111194989
TU240722 other upstream 156546 19091146 ~ 19092146 (-) True G177704
XR_002651453.1 other upstream 185186 19119786 ~ 19128122 (-) False LOC103035567
TU241386 other upstream 2356922 21291522 ~ 21295833 (-) True G178173
TU241489 other upstream 2998919 21933519 ~ 21933831 (-) True G178267
TU241733 other upstream 3520897 22455497 ~ 22456779 (-) True G178426

Expression Profile