RNA id: TU240675


Basic Information

Item Value
RNA id TU240675
length 549
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G177669
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18950852 ~ 18954940 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCATCAATTTACTCTGGTCTGTGTTAGAAATtcggctttcaggaatcaggagtcagaatcaggaatcaggagacagcttgagagatgacttgagtttattctcgtgcagacagaaaatctacacGGGCACAGCTTAGTTGGTCGTTGCTCCCTCTGTGTCCGCCTGACTAGTCCATGTGACTTGTCTGTCTGTTACTGTCTGTGTGAGACTCTCTGACCGAGACTCAACTAGACTGAGCTTGACTGAACTGAGTGAGACTCAACTAGACTGAGCTACTAAGACATTTTAGCAGGACTTTACATACAGGAGAAACTGCTTTGAACACAGCAGGGGGAGAAAGGGTAAGGGTTTATGGAGGAGTATGTGGGGGGTGTCATCATTGGGGGTGTCTCTATCAACTTATGTTAAACAAAGGAGAGATGTGAGAGATAAGGGTGAGGGGCAAAAGGTTAGGAGTGTATAGGGAAAAAAGGGGGGTTAAGGAGTGAGACAGTTTAGAAccttaataaaagaaaacttaataaaagtacaatttgttGTTGACAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240656 lncRNA downstream 16252 18887030 ~ 18934600 (-) False LOC103029522
TU240636 lncRNA downstream 121565 18827603 ~ 18829287 (-) True G177644
TU240597 lncRNA downstream 152718 18743510 ~ 18798134 (-) True G177617
TU240612 lncRNA downstream 210273 18736864 ~ 18740579 (-) True G177626
TU240574 lncRNA downstream 318182 18632414 ~ 18632670 (-) True G177609
TU240688 lncRNA upstream 28872 18983812 ~ 18987415 (-) True G177678
XR_002651452.1 lncRNA upstream 120307 19075247 ~ 19076916 (-) True LOC111195061
TU240704 lncRNA upstream 120435 19075375 ~ 19078334 (-) False G177688
TU240705 lncRNA upstream 120435 19075375 ~ 19078334 (-) True G177688
XR_002651451.1 lncRNA upstream 122631 19077571 ~ 19077976 (-) True LOC103033103
XM_007254973.3 mRNA downstream 42121 18887028 ~ 18908731 (-) True LOC103029522
XM_007254972.3 mRNA downstream 67681 18873117 ~ 18883171 (-) True LOC103029209
XM_015607293.2 mRNA downstream 67700 18873117 ~ 18883152 (-) False LOC103029209
XM_022681184.1 mRNA downstream 80711 18847995 ~ 18870141 (-) False LOC103028676
XM_022681183.1 mRNA downstream 80714 18847995 ~ 18870138 (-) True LOC103028676
XM_022681187.1 mRNA upstream 39934 18994874 ~ 19005861 (-) False LOC103029848
XM_007254974.3 mRNA upstream 39934 18994874 ~ 19005860 (-) True LOC103029848
XM_022681189.1 mRNA upstream 83370 19038310 ~ 19048336 (-) True LOC103030174
XM_007254980.3 mRNA upstream 98051 19052991 ~ 19056252 (-) True LOC103031534
XM_007254986.3 mRNA upstream 108610 19063550 ~ 19072529 (-) True rhof
TU240520 other downstream 547844 18397582 ~ 18403008 (-) True G177568
TU240457 other downstream 776327 18171849 ~ 18174525 (-) True G177526
XR_002651445.1 other downstream 3160208 15780555 ~ 15790644 (-) False stoml2
TU238985 other downstream 3385389 15530986 ~ 15565463 (-) False LOC111194989
TU240722 other upstream 136206 19091146 ~ 19092146 (-) True G177704
XR_002651453.1 other upstream 164846 19119786 ~ 19128122 (-) False LOC103035567
TU241386 other upstream 2336582 21291522 ~ 21295833 (-) True G178173
TU241489 other upstream 2978579 21933519 ~ 21933831 (-) True G178267
TU241733 other upstream 3500557 22455497 ~ 22456779 (-) True G178426

Expression Profile