RNA id: TU240688


Basic Information

Item Value
RNA id TU240688
length 1610
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G177678
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 18983812 ~ 18987415 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTGAATAAAtctaaattttaataaaatcaatacagtacaatatgcTAAAAAATCAAAAGTATGAAACATTTCATAATGattgtaaaaaacaaatcacaaaacaagtgtaaaaaaatacgCTAAGTTCTCAAAAGTATAAAAGGTTACATTAAACAAGCTTTgattaatttcacattttaattcACATTCTTTCATATTTTCCTCCACTGACCACATGAGGGCGCTAAGGGTCGGGCAACAGTTACATTTACACAGCAGTTAAGATTAGAAACTGAGTTCCGCGTTAGATGATGGTTATTTTGTTGTTCTTCATATGTCTCATTGCGGAGCTGCATCGGAAACAGCGCCACCTGTGATTTGTGCGTTATGAGCATTATGTTTGTTAAGGTCAGTATTTACTAAGCCAGGAGTCTTTAAGAACAAAGACGTTATCTGTGTGTGGGGATTGACTCGGTTCTCAGCAGTTTCTCAGGTCCTGTGAAGAACACCACCTCTCTTAAGTTTGGGGACAAAGAAGAATGCTCTCATGGGGATGGTTCAATTCTGCCTTTGCTGTAGAGCGAAACACTGCTAAAACAAACTGCTGCTGTGATTGATGATCTGAGGAGCATCTCATACGACAGTCTGTCACCCCTAGTACTGATATGAGGAACATTAAAAGCTCAGTgatatgtgcagaacatcctgcagacacATGTGCTGATGCCTGCTGAtaacatttttcagcaggataatgctcacccacacactgcaAGGGTTTCCCCGGAACATCTCCACTTCCTTGTTTTGCTCGGTTTCCAGATTTATCagcaatccagcatttatggagcagctgggacgctgcagcttcagcttcaacctatGAGTGTAgaacaggatctacaggtccaactgtagcaacatctgtaagtaaatgtgctgcaggatccttAAGGAACCTGTACACCTCCACCATACCCAAccgtctcaatctcatcttatatccaggatAGAGGATCACACAGGAAACTAGAACCTCCTTTCAGTTACATAAGAGTTTAACCCAATAAACGTATTATTCTTTCACTCtaatatatcatcattacattcacacagatACACATTCGCTACATTACAGCTATCAACTTCGTggtatgttattttatttttggcccCAAACTTTTGGAGGGTAGTGTTCTATCTGTAATTCACTCTAATCATTGGTTAGAGGGGTATTATTTGTTGGGTATCGATTTGATGATCTAATCTAATGTGGTTTTCCAAAGAATACACAGTCCAATCACAGTGATGGTCCAGTGTTGGACAGTCTGTGCTAAGGAACCGCCTCTTGTGACTTGCTCAGTGCAGCAGTAGAAGTTCTGGCTGTTTCTTGGCGGGTGAGGGTTGGAtgagggtcagtgtgtgttggaTGATAGTTCACTGGTCAGGTGCGGGTTCGGGTCAGTACCCCGCTGCCACACCGTTCTTGCGTTTGTCGGATACGGCGCTGATGCAGCCGCCCTCCTTCTCCACGGCGTTCACCACGTTCAGGAAGTATCCCCGCTGCCCGATGGTGTGACCCAGGGACTCTAGCTTCTTCACGAGCGACTGCAGAACACAGATACATCGg

Function

GO: NA

KEGG:

id description
ko04978 Mineral absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240675 lncRNA downstream 28872 18950852 ~ 18954940 (-) False G177669
TU240676 lncRNA downstream 32061 18950852 ~ 18951751 (-) True G177669
TU240656 lncRNA downstream 49212 18887030 ~ 18934600 (-) False LOC103029522
TU240636 lncRNA downstream 154525 18827603 ~ 18829287 (-) True G177644
TU240597 lncRNA downstream 185678 18743510 ~ 18798134 (-) True G177617
XR_002651452.1 lncRNA upstream 87832 19075247 ~ 19076916 (-) True LOC111195061
TU240704 lncRNA upstream 87960 19075375 ~ 19078334 (-) False G177688
TU240705 lncRNA upstream 87960 19075375 ~ 19078334 (-) True G177688
XR_002651451.1 lncRNA upstream 90156 19077571 ~ 19077976 (-) True LOC103033103
TU240700 lncRNA upstream 122746 19110161 ~ 19159146 (-) True G177685
XM_007254973.3 mRNA downstream 75081 18887028 ~ 18908731 (-) True LOC103029522
XM_007254972.3 mRNA downstream 100641 18873117 ~ 18883171 (-) True LOC103029209
XM_015607293.2 mRNA downstream 100660 18873117 ~ 18883152 (-) False LOC103029209
XM_022681184.1 mRNA downstream 113671 18847995 ~ 18870141 (-) False LOC103028676
XM_022681187.1 mRNA upstream 7459 18994874 ~ 19005861 (-) False LOC103029848
XM_007254974.3 mRNA upstream 7459 18994874 ~ 19005860 (-) True LOC103029848
XM_022681189.1 mRNA upstream 50895 19038310 ~ 19048336 (-) True LOC103030174
XM_007254980.3 mRNA upstream 65576 19052991 ~ 19056252 (-) True LOC103031534
XM_007254986.3 mRNA upstream 76135 19063550 ~ 19072529 (-) True rhof
TU240520 other downstream 580804 18397582 ~ 18403008 (-) True G177568
TU240457 other downstream 809287 18171849 ~ 18174525 (-) True G177526
XR_002651445.1 other downstream 3193168 15780555 ~ 15790644 (-) False stoml2
TU238985 other downstream 3418349 15530986 ~ 15565463 (-) False LOC111194989
TU240722 other upstream 103731 19091146 ~ 19092146 (-) True G177704
XR_002651453.1 other upstream 132371 19119786 ~ 19128122 (-) False LOC103035567
TU241386 other upstream 2304107 21291522 ~ 21295833 (-) True G178173
TU241489 other upstream 2946104 21933519 ~ 21933831 (-) True G178267
TU241733 other upstream 3468082 22455497 ~ 22456779 (-) True G178426

Expression Profile