RNA id: TU240704


Basic Information

Item Value
RNA id TU240704
length 1085
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G177688
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19075375 ~ 19078334 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGTGGGAGCGCTGAGCTCGCGCTCTGAGGCCTAATGCGGTTCCTTTGTTCCTAAAAGGATCTAAAGCTTCATTCCAGCTCCTCATGACGGACTATCACACATACTGTCTCTCTGAGTGCAGGATATCTGAGAAGAAGGAAGAAATGTTGGACCGAATCcctttgacattttttaaacttgttctcttttttcctctctctttctctctctcttttctctctttttccaggAATCCATCTTTGTCCTGGCAAACTAGGTCATGGCACACCCATATCACAGCATTTTACTCTACTTTCTCACAGTGAAATGCTACTGAATAAACAGCTGATTGACAAAAACAAAcgttttagaaagaaaaagagaaaaaaatacacatgcAAATGTTACCATCAGCTGCGTAGGCAGGCCCTCCCCTGCGCAAGGCCGAGCATGTGAATGTGCCTAAGAAACATTATCtaccctgctgctgctgaaccacCGAGATCAGCCCGAGAACACAACCCGTAAAAAGCCCATTGAGGATATTTACCTTCGCCTTTCTGCTGAAATAATTTTATCAGGCCTAAAGGCAGGAGACTGTACGCTTTCACTCCCATCGCCGTCCTGTAACTCGACTGATTTAGATAAAAGGAGGTCAGACCCGCTCTAAATCCTCCTTTAtcaattcatattaaaaataaaatatcagcaGTGAAGGAGCCACAGAGCGCAGACTGAGGAGCCAAACTGCTGCAAATCAGCTGCAAAAATTActtttacagaaaatagatatgcaaatcatctctctctctttttccttctcaCTGTCTCCTCGCCCTtccttcagtctctctctctttttcctgctCAAGCATTTGCTGTTCATTTTTTAGACAGCAGCATGTTCACATTTCCATCTGTGGGCTGGGGACTGCCTGTTTTTATTGATAAGGTAACAAtgatgacaataaaaaacattttactgttATATAGCCATTAGGCATAGgaataacattatttttaccATACCTGCACATACTTTGCACTATACACATACTGTTTTATGttaatcttatatatatattttcaattggtttgtttttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240688 lncRNA downstream 87960 18983812 ~ 18987415 (-) True G177678
TU240675 lncRNA downstream 120435 18950852 ~ 18954940 (-) False G177669
TU240676 lncRNA downstream 123624 18950852 ~ 18951751 (-) True G177669
TU240656 lncRNA downstream 140775 18887030 ~ 18934600 (-) False LOC103029522
TU240636 lncRNA downstream 246088 18827603 ~ 18829287 (-) True G177644
TU240700 lncRNA upstream 31827 19110161 ~ 19159146 (-) True G177685
TU240751 lncRNA upstream 65944 19144278 ~ 19147039 (-) True G177717
TU240765 lncRNA upstream 83283 19161617 ~ 19164767 (-) True G177728
TU240768 lncRNA upstream 87756 19166090 ~ 19168529 (-) True G177729
TU240787 lncRNA upstream 122215 19200549 ~ 19202732 (-) True G177742
XM_007254986.3 mRNA downstream 2846 19063550 ~ 19072529 (-) True rhof
XM_007254980.3 mRNA downstream 19123 19052991 ~ 19056252 (-) True LOC103031534
XM_022681189.1 mRNA downstream 27039 19038310 ~ 19048336 (-) True LOC103030174
XM_022681187.1 mRNA downstream 69514 18994874 ~ 19005861 (-) False LOC103029848
XM_022681190.1 mRNA upstream 21528 19099862 ~ 19106136 (-) True LOC103047211
XM_007254987.3 mRNA upstream 33700 19112034 ~ 19121657 (-) True dgcr2
XM_015607301.2 mRNA upstream 44320 19122654 ~ 19128123 (-) False LOC103035567
XM_007254995.3 mRNA upstream 44320 19122654 ~ 19128122 (-) True LOC103035567
XM_007254992.3 mRNA upstream 50873 19129207 ~ 19133378 (-) True dusp11
TU240520 other downstream 672367 18397582 ~ 18403008 (-) True G177568
TU240457 other downstream 900850 18171849 ~ 18174525 (-) True G177526
XR_002651445.1 other downstream 3284731 15780555 ~ 15790644 (-) False stoml2
TU238985 other downstream 3509912 15530986 ~ 15565463 (-) False LOC111194989
TU240722 other upstream 12812 19091146 ~ 19092146 (-) True G177704
XR_002651453.1 other upstream 41452 19119786 ~ 19128122 (-) False LOC103035567
TU241386 other upstream 2213188 21291522 ~ 21295833 (-) True G178173
TU241489 other upstream 2855185 21933519 ~ 21933831 (-) True G178267
TU241733 other upstream 3377163 22455497 ~ 22456779 (-) True G178426

Expression Profile