RNA id: TU240751


Basic Information

Item Value
RNA id TU240751
length 280
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G177717
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19144278 ~ 19147039 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttttttcagtaccaTGAATGTGGAAGTGTAAAGACTGTGATGCAGAAGAAGCTACAAGATCTCAGTTACTGAAACACTACAGGGAGCACTACAGAGCATTTGAACTTCAGTCATCTTCAGCAAGAGAAATTGTGTTGGTTGAGTTAAGTGAACTGACGGACAGCTACCCTTTGGTTGACTACAAGTGTGGAATCCACCGAATGGTCTCCCTTAAAAGATACATATACACATCTGGTAATAAATCTTAATATTTATTTcaccatatgttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240704 lncRNA downstream 65944 19075375 ~ 19078334 (-) False G177688
TU240705 lncRNA downstream 65944 19075375 ~ 19078334 (-) True G177688
XR_002651451.1 lncRNA downstream 66302 19077571 ~ 19077976 (-) True LOC103033103
XR_002651452.1 lncRNA downstream 67362 19075247 ~ 19076916 (-) True LOC111195061
TU240688 lncRNA downstream 156863 18983812 ~ 18987415 (-) True G177678
TU240765 lncRNA upstream 14578 19161617 ~ 19164767 (-) True G177728
TU240768 lncRNA upstream 19051 19166090 ~ 19168529 (-) True G177729
TU240787 lncRNA upstream 53510 19200549 ~ 19202732 (-) True G177742
TU240776 lncRNA upstream 67267 19214306 ~ 19216110 (-) True G177735
TU240774 lncRNA upstream 70076 19217115 ~ 19219395 (-) True G177734
XM_007254992.3 mRNA downstream 10900 19129207 ~ 19133378 (-) True dusp11
XM_015607301.2 mRNA downstream 16155 19122654 ~ 19128123 (-) False LOC103035567
XM_007254995.3 mRNA downstream 16156 19122654 ~ 19128122 (-) True LOC103035567
XM_007254987.3 mRNA downstream 22621 19112034 ~ 19121657 (-) True dgcr2
XM_022681190.1 mRNA downstream 38142 19099862 ~ 19106136 (-) True LOC103047211
XM_022681191.1 mRNA upstream 11063 19158102 ~ 19162507 (-) True LOC103036397
XM_007254998.3 mRNA upstream 11063 19158102 ~ 19161050 (-) False LOC103036397
XM_007255034.2 mRNA upstream 35210 19182249 ~ 19185669 (-) True LOC103047514
XM_007255002.3 mRNA upstream 63841 19210880 ~ 19213378 (-) True inip
XM_007255004.3 mRNA upstream 72795 19219834 ~ 19235608 (-) False lin54
XR_002651453.1 other downstream 16156 19119786 ~ 19128122 (-) False LOC103035567
TU240722 other downstream 52132 19091146 ~ 19092146 (-) True G177704
TU240520 other downstream 741270 18397582 ~ 18403008 (-) True G177568
TU240457 other downstream 969753 18171849 ~ 18174525 (-) True G177526
XR_002651445.1 other downstream 3353634 15780555 ~ 15790644 (-) False stoml2
TU241386 other upstream 2144483 21291522 ~ 21295833 (-) True G178173
TU241489 other upstream 2786480 21933519 ~ 21933831 (-) True G178267
TU241733 other upstream 3308458 22455497 ~ 22456779 (-) True G178426
TU241723 other upstream 3354279 22501318 ~ 22506501 (-) True LOC103023660
trnam-cau_23 other upstream 3383569 22530608 ~ 22530679 (-) True trnam-cau_23

Expression Profile