RNA id: TU240787


Basic Information

Item Value
RNA id TU240787
length 1375
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G177742
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19200549 ~ 19202732 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCAGAGGAACCACAGTTTGACTGAAAATTCAAAATTTAAtagctaaatttagaaaaaattcAACCGACACTGCAAATTTACACCACTTAAAATATCTTCCAATACCAAAATAGcttaaaaacatgaattaaattCACACTTCAAATATAAGGGGTCACAATTAGCCAAAACAGTCTTTACTAAATGGAATAAGCTATGCAGGCACTGCATGGGAACTAGTGTGTCCAAAATGTTCACTGCAGTGAGGTTGAATTTGTTGAGGTTATATAAACTCAAAATCCTTAACAAGAAAAGAATTTAAATTTATCAAAAgaatagaaataaaagaaaatcttgaATAGAACAAACACGCCCAGACCTAATTCTGATTTACTGAAAACGAAACCAGTCTAGGAAAGTCTAAgaaattaaaacacacaggGTTACCATCAACCTAAATTAATTGGCCAATTTATCATAAACACCCATCATATAGATGCGCgtgtaccctttccatcagtaaaaaatatTGAGCAGTAACCAgatattaagtgtgtgtgtgcactgaaTGTGTTGTGCTAAAATGTGTGTCCCGGTATTTCTGCAGTGGAAAAAGCCTAATGTGTATTCCACATTTACAGTTCTTTATGTCTGCATCGGTCACCTGATAAACTAATGGTGGAAGATCTGAACACACCAGTTTCAAAGTGAAATTCAAATATTTGTCTTCAAATCAAATCGTCTTCAAAACTCATAAAACTCAAGAAATGAGGATCTGGGCTCTGACCAGTGGCCAAGAAAATAAAGTGAGTACGCTGTTTGGTTCTTGTGCATTTACAGAATATGAGCAGTAAATAACACTGATCACACGAGTACGATGGAGAGATGGGACTGAACCGAGTGAAGGTCCTTCGGATGTTTGGTTTCACATATAAGAAGGCCCGGATTTCTGTGGACTGTGGAACAGGTAGGGCTCCTGTGCCAGCCTTTTCCTCTGACCAATTCTTAATCTGCACTTGTTGATACAGGCTTTCTTCAGCTTGGCTGATTCCACAGgtgtccatccatccaaactGGAGCAATGCAGCACATAcgCTATAATTCCATCAACAGTTCTTCGATCTAGTATTTTCTTCCCATCTGGCACCTTCCCCCTCTTTCCAAAAGCCACAGCTCCTATAAGATCTTCCTCACTGAAGAAGTGTTCAAACAGCAGGTGAAAGAGCCTCATGCTGTCCTGTCTGGACTCCTGGTGTATGGTGGTCAGTCTGGACGTGGGGAGGTAAAGTCCACAGCCCGGAAAAAGCTCCTGCACCCCAACCCTCGGAGGGCTGACCTCAGGAACACGGGTTCTCTCGTGAATCACGAGAACCCTGGAAATTACCGCCTGCAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240768 lncRNA downstream 32020 19166090 ~ 19168529 (-) True G177729
TU240765 lncRNA downstream 35782 19161617 ~ 19164767 (-) True G177728
TU240700 lncRNA downstream 41403 19110161 ~ 19159146 (-) True G177685
TU240751 lncRNA downstream 53510 19144278 ~ 19147039 (-) True G177717
TU240705 lncRNA downstream 122215 19075375 ~ 19078334 (-) True G177688
TU240776 lncRNA upstream 11574 19214306 ~ 19216110 (-) True G177735
TU240774 lncRNA upstream 14383 19217115 ~ 19219395 (-) True G177734
TU240795 lncRNA upstream 34619 19237351 ~ 19240764 (-) True G177746
TU240800 lncRNA upstream 58289 19261021 ~ 19266467 (-) True G177751
TU240816 lncRNA upstream 138810 19341542 ~ 19341849 (-) True G177762
XM_007255034.2 mRNA downstream 14880 19182249 ~ 19185669 (-) True LOC103047514
XM_022681191.1 mRNA downstream 38042 19158102 ~ 19162507 (-) True LOC103036397
XM_007254998.3 mRNA downstream 39499 19158102 ~ 19161050 (-) False LOC103036397
XM_007254992.3 mRNA downstream 67171 19129207 ~ 19133378 (-) True dusp11
XM_015607301.2 mRNA downstream 72426 19122654 ~ 19128123 (-) False LOC103035567
XM_007255002.3 mRNA upstream 8148 19210880 ~ 19213378 (-) True inip
XM_007255004.3 mRNA upstream 17102 19219834 ~ 19235608 (-) False lin54
XM_007255005.3 mRNA upstream 17102 19219834 ~ 19235608 (-) False lin54
XM_007255003.3 mRNA upstream 17102 19219834 ~ 19233619 (-) True lin54
XM_007255007.2 mRNA upstream 43270 19246002 ~ 19249795 (-) True plac8
XR_002651453.1 other downstream 72427 19119786 ~ 19128122 (-) False LOC103035567
TU240722 other downstream 108403 19091146 ~ 19092146 (-) True G177704
TU240520 other downstream 797541 18397582 ~ 18403008 (-) True G177568
TU240457 other downstream 1026024 18171849 ~ 18174525 (-) True G177526
XR_002651445.1 other downstream 3409905 15780555 ~ 15790644 (-) False stoml2
TU241386 other upstream 2088790 21291522 ~ 21295833 (-) True G178173
TU241489 other upstream 2730787 21933519 ~ 21933831 (-) True G178267
TU241733 other upstream 3252765 22455497 ~ 22456779 (-) True G178426
TU241723 other upstream 3298586 22501318 ~ 22506501 (-) True LOC103023660
trnam-cau_23 other upstream 3327876 22530608 ~ 22530679 (-) True trnam-cau_23

Expression Profile