RNA id: TU240800


Basic Information

Item Value
RNA id TU240800
length 1445
lncRNA type inter_gene
GC content 0.44
exon number 10
gene id G177751
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19261021 ~ 19266467 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAAACATTCATTTCTTATCTGCACAGCTGACTGTTAAATCATTAAGGGGCAGTTTCCTATAGTGGGAATTAATCCTAGTCTACACTCCAGAGTGTGCCATGTTCTTACCTGCGActgctcttcttttctctctcctcgcCAACCTCAGCTTTCTCTTCTCCCACTTTTCCTTTCTTCAGTTTGTTTGAGATGCGGTCTCTCATTTCCTTTCTCCTCAGAGCTGCATCCTCATCGTCTTCGTCATCCTCGTCTCTATCTTTCATTTCATCATCTTCCTCTGAATTTTCCCCTCTTCCTTCaggacctgtttttCTGTCAACAACCGGTACTGAGCTCAACTTCGGATCGTCCTTTAGAAGGTCGTGACTGCTTTTGCTTTTCCCCTTCATTGTCTGGCTGACTTGAGTGACcatttcctcttcctcttctgccTCCTCACCAAACGAGAGCAAGCTGAAATTTTTTGTTGCCTTAGACTGAGATTTCTTTGTCTCCTCTTTGGATTTCTCTTTCTTGCCTTTTATTTCACGAGGCTCAATGTCATCAAACGGAGAATGTAAAACCTCTGTAGATCGGATTTTGTGGGGATTTAGCGGCCGCTCGTTACTGTCACACTCCACCTCTGCCAACCGTAACATGTTATACACTGTGTCTCCTGTGACCTTTCCAAAAATGGTGTGCTTGTTATTGAGCTCATCAGCCCGTCCCAGTGTGAAGAAGAACTGGCTTCCATTATCGTGTGGTCCTGCATTTGCCATGGCCACCAAACCTCTCCTGTTGAACCGTAATCTGGAGTGAAACTCGTCCTTGAAAGGACGGCCATAGATAGACTCCCCTCCAGTTCCAGTGCCGGTGGGATCACCCCCCTGGATAATAAATTCTGGCACAACACGATGGAATATGGTCCCATTGTAGTAACCTTCCATGCACAGCTGAGTGAAGTTTCTGCAGGCTTTGGGAGCTTCTTTGGACCACAGCTCCACATCAATATCACCTGCAGAGGTCTTAATTAAAAcCTTGCCACTAGTCGGAGGCTCCTGGATGTATATGTTGCTCATGTTTGAAGCAGTATTAGTAGGACGCCAGCTAccgtactgaaaaaaaaacgataatAAACGGCTAAAAAACTcgcataaacataaaatatcacTCTAATAAATCCTGTACACCGCCGCCAGCTTAGACTTCTCCTTCTTTAACATCCTGActgggggaaaaacactgctaaCCGCACTGCTGCCACCTAAAGCTAGCGAACCAACCTACAGTTCAGAGGCCCAAGATAGTtatgccagagaatctctataatAGCAAGGTTTGTTTAACCACCAGAGGGCGCACCCAAGTgagtttactgtagaaaatataaaatatacaggtgagttctatatattttattagcaAAATACACTATTCCGACTTccaaaattaaatgaatgtaccgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240795 lncRNA downstream 20257 19237351 ~ 19240764 (-) True G177746
TU240774 lncRNA downstream 41626 19217115 ~ 19219395 (-) True G177734
TU240776 lncRNA downstream 44911 19214306 ~ 19216110 (-) True G177735
TU240787 lncRNA downstream 58289 19200549 ~ 19202732 (-) True G177742
TU240768 lncRNA downstream 92492 19166090 ~ 19168529 (-) True G177729
TU240816 lncRNA upstream 75075 19341542 ~ 19341849 (-) True G177762
TU240826 lncRNA upstream 131481 19397948 ~ 19401691 (-) True G177770
TU240827 lncRNA upstream 131481 19397948 ~ 19401691 (-) False G177770
TU240828 lncRNA upstream 131481 19397948 ~ 19401691 (-) False G177770
TU240822 lncRNA upstream 181301 19447768 ~ 19449065 (-) True G177766
XM_007255008.3 mRNA downstream 1104 19256089 ~ 19259917 (-) True srek1ip1
XM_007255007.2 mRNA downstream 11226 19246002 ~ 19249795 (-) True plac8
XM_007255004.3 mRNA downstream 25413 19219834 ~ 19235608 (-) False lin54
XM_007255005.3 mRNA downstream 25413 19219834 ~ 19235608 (-) False lin54
XM_007255003.3 mRNA downstream 27402 19219834 ~ 19233619 (-) True lin54
XM_022681196.1 mRNA upstream 91655 19358122 ~ 19430590 (-) False adamts6
XM_022681197.1 mRNA upstream 91655 19358122 ~ 19429085 (-) True adamts6
XM_007255010.3 mRNA upstream 183278 19449745 ~ 19458441 (-) True trim23
XM_015607287.2 mRNA upstream 183278 19449745 ~ 19456028 (-) False trim23
XM_022681201.1 mRNA upstream 209861 19476328 ~ 19494263 (-) True sgtb
XR_002651453.1 other downstream 132899 19119786 ~ 19128122 (-) False LOC103035567
TU240722 other downstream 168875 19091146 ~ 19092146 (-) True G177704
TU240520 other downstream 858013 18397582 ~ 18403008 (-) True G177568
TU240457 other downstream 1086496 18171849 ~ 18174525 (-) True G177526
XR_002651445.1 other downstream 3470377 15780555 ~ 15790644 (-) False stoml2
TU241386 other upstream 2025055 21291522 ~ 21295833 (-) True G178173
TU241489 other upstream 2667052 21933519 ~ 21933831 (-) True G178267
TU241733 other upstream 3189030 22455497 ~ 22456779 (-) True G178426
TU241723 other upstream 3234851 22501318 ~ 22506501 (-) True LOC103023660
trnam-cau_23 other upstream 3264141 22530608 ~ 22530679 (-) True trnam-cau_23

Expression Profile