RNA id: XM_007255022.3


Basic Information

Item Value
RNA id XM_007255022.3
length 1501
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC103043854
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20089238 ~ 20096711 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCTTTTAGCTTCAAACATAGCATAGAGAACTCTGAATCTGAATAACTTGGAGAGTACTGAGAACTTAATCCACTCCAATCCTCAGAAGCGTTGGATTCAaactggttggttggttataTAGCACAGAATACACCTGAAGAAAATGAAGGCCGCCATTGTTTTCGTGCTCCTCTTTGCCATAGTCTACTGTCGTCCTCTGAAGCGTTCAGTGAGCAGCTCAGAGAGTTCTGAGGAACAAGCCGCTGCCAAACCGGCGCCCCCAATTCTGCAGAAAGCCCCTGCAAAAGCAGTGCAGGCAGTAGAGGTTGTACCTGCTCAGGCTGTTAAAGCAGCTCCAGAAGCTCCAGCAGatccagaagcagcagcagcggcagcatcATCGGATGAGGACGACTCAGATGAAGCTGAGGACACAAACACGCCATCAGACACAGAGGACGACAGCGCAGACAGTGCTGACAGCGTGGACACGCAGGACACCGACTCCAGTGAGAGTGCTGAGTCTGGAGAAACTGAGGCCACCACCACCCCACCTTTCACTGAGGAGCCCACCCTGGGCCCTATTATTAACGACGGCCGCGGAGACAACATGGGCTACCCCAGCGACTACAAGAAGACCATCATCTACGTAGATGCCAACGAAATCGAGAAGATATCTTCTCCCTACAAGTCCTACGTGCCTGAGCACATCGAGGGTCTGAACACCATCAGTAAGAAGACCTCCCACTACGACGGGCAGGAAGCCAATGACGTTGAGAAGCATCTGAAGGTTTACAAGGCTCTGCAGGTGCACAATGATGTTCTGGAGGAGGACACCAGCACCCCTGAGGAGGAGAGCCAGGGTCTGGAGGCTTCCAGCGGTACTGAGGAAGAGGAGCCCAATGCAAAGCAGGCGTCTCTGGATGATCAACAGGGGGAGAGTGATGGTGCCAGTGCCAGTGAAGCCGCCGGTGAGAGTGCCAGTGCCAGTGCCAGCCAGGAGGAGACGGCAGCGTCCGACAGCAGCCAAAGCAGCGAGGAGGCCACCGCCACCCCCGGTGCCGCCGACGGCGAGAGCGACTCCTCTCAGAGCTCCGAGAGCCTGGAGGACGACTCCGCTGAGCAGACAGTGGAGGCAACGTCCGACATCCCTGACGTCATCATCGCCAAATAAACACCCCACCAGCACAAAACCCCCGAGACGCCCAAACTGCTGTTCCCAGTGAAGAATGCAACCTTATCCAGAGTggtgctaataataataagagactCACTTCACTGTCtccatgagagagagagagataataataatataagtagCAGAtcgcaataaaataaatatcagacAAGCCTGGTCATGGGCTGTGGCTGCATGATGCTACCTGTAAAGAAGCAGTTTCTTCTCATCACAACAAAATTTTGCACATTTATTTACGATATGTTTATGTAAAGTATTTTATGCTGCCATGTATCATGATTTatcctttattaataaattctttttttttttcaaaaaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240988 lncRNA upstream 94071 19990644 ~ 19995167 (+) True G177885
XR_002651456.1 lncRNA upstream 133764 19949596 ~ 19955474 (+) True LOC111195063
TU240961 lncRNA upstream 198525 19890267 ~ 19890713 (+) True G177861
XR_001518763.2 lncRNA upstream 212848 19875366 ~ 19876390 (+) True LOC107197765
TU240916 lncRNA upstream 256128 19795144 ~ 19833110 (+) True G177830
TU241057 lncRNA downstream 3865 20100576 ~ 20100802 (+) True G177940
XR_002651458.1 lncRNA downstream 8623 20105334 ~ 20123848 (+) False LOC111195064
XR_002651457.1 lncRNA downstream 24535 20121246 ~ 20123848 (+) True LOC111195064
TU241076 lncRNA downstream 61136 20157847 ~ 20163869 (+) True G177955
TU241106 lncRNA downstream 74574 20171285 ~ 20173721 (+) True G177976
XM_007255020.3 mRNA upstream 156418 19919877 ~ 19932820 (+) True pum3
XM_022681215.1 mRNA upstream 170261 19896739 ~ 19918977 (+) False LOC103023409
XM_022681214.1 mRNA upstream 170261 19896740 ~ 19918977 (+) True LOC103023409
XM_022681216.1 mRNA upstream 170261 19896740 ~ 19918977 (+) False LOC103023409
XM_022681217.1 mRNA upstream 172185 19896737 ~ 19917053 (+) False LOC103023409
XM_007260831.3 mRNA downstream 52547 20149258 ~ 20150118 (+) True LOC103030097
XM_007260825.3 mRNA downstream 55750 20152461 ~ 20155315 (+) True LOC103027562
XM_015608721.2 mRNA downstream 132816 20229527 ~ 20257745 (+) True smad2
XM_007260822.3 mRNA downstream 132816 20229527 ~ 20257745 (+) False smad2
XM_015608718.2 mRNA downstream 284978 20381689 ~ 20395156 (+) False skor2
XR_002651455.1 other upstream 313447 19750942 ~ 19775791 (+) False LOC103042206
TU240867 other upstream 366849 19720301 ~ 19722389 (+) False LOC111194983
TU240134 other upstream 1545241 18539898 ~ 18543997 (+) False LOC103024155
XR_002651448.1 other upstream 1758749 18324873 ~ 18330489 (+) False LOC103047412
TU240030 other upstream 1863105 18224273 ~ 18226133 (+) True G177219
TU241070 other downstream 42111 20138822 ~ 20139564 (+) True G177950
TU241506 other downstream 2152433 22249144 ~ 22301065 (+) False LOC103046694
TU241591 other downstream 2363681 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other downstream 2363681 22460392 ~ 22465702 (+) False LOC103025565
TU241592 other downstream 2365280 22461991 ~ 22465702 (+) False LOC103025565

Expression Profile