RNA id: TU241057


Basic Information

Item Value
RNA id TU241057
length 227
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G177940
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20100576 ~ 20100802 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaagatgctgtaccagctaagctgcgtcttcagtaacgtctcggacttcactatgtgtacaaaggacaataagtggcaaacaaggcgttttgtgaagcagaacttttaataatatgcacacaaccgtggcaatcacaggtaataaacataacttacttttcagaagcttgtttgccacttattgtcctttgtatacagctggtacagcatcttttaaggtcccccg

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU240988 lncRNA upstream 105409 19990644 ~ 19995167 (+) True G177885
XR_002651456.1 lncRNA upstream 145102 19949596 ~ 19955474 (+) True LOC111195063
TU240961 lncRNA upstream 209863 19890267 ~ 19890713 (+) True G177861
XR_001518763.2 lncRNA upstream 224186 19875366 ~ 19876390 (+) True LOC107197765
TU240916 lncRNA upstream 267466 19795144 ~ 19833110 (+) True G177830
XR_002651458.1 lncRNA downstream 4532 20105334 ~ 20123848 (+) False LOC111195064
XR_002651457.1 lncRNA downstream 20444 20121246 ~ 20123848 (+) True LOC111195064
TU241076 lncRNA downstream 57045 20157847 ~ 20163869 (+) True G177955
TU241106 lncRNA downstream 70483 20171285 ~ 20173721 (+) True G177976
TU241129 lncRNA downstream 98962 20199764 ~ 20203551 (+) True G177995
XM_007255022.3 mRNA upstream 3865 20089238 ~ 20096711 (+) True LOC103043854
XM_007255020.3 mRNA upstream 167756 19919877 ~ 19932820 (+) True pum3
XM_022681215.1 mRNA upstream 181599 19896739 ~ 19918977 (+) False LOC103023409
XM_022681214.1 mRNA upstream 181599 19896740 ~ 19918977 (+) True LOC103023409
XM_022681216.1 mRNA upstream 181599 19896740 ~ 19918977 (+) False LOC103023409
XM_007260831.3 mRNA downstream 48456 20149258 ~ 20150118 (+) True LOC103030097
XM_007260825.3 mRNA downstream 51659 20152461 ~ 20155315 (+) True LOC103027562
XM_015608721.2 mRNA downstream 128725 20229527 ~ 20257745 (+) True smad2
XM_007260822.3 mRNA downstream 128725 20229527 ~ 20257745 (+) False smad2
XM_015608718.2 mRNA downstream 280887 20381689 ~ 20395156 (+) False skor2
TU241050 other upstream 6714 20089261 ~ 20093862 (+) False LOC103043854
XR_002651455.1 other upstream 324785 19750942 ~ 19775791 (+) False LOC103042206
TU240867 other upstream 378187 19720301 ~ 19722389 (+) False LOC111194983
TU240134 other upstream 1556579 18539898 ~ 18543997 (+) False LOC103024155
XR_002651448.1 other upstream 1770087 18324873 ~ 18330489 (+) False LOC103047412
TU241070 other downstream 38020 20138822 ~ 20139564 (+) True G177950
TU241506 other downstream 2148342 22249144 ~ 22301065 (+) False LOC103046694
TU241591 other downstream 2359590 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other downstream 2359590 22460392 ~ 22465702 (+) False LOC103025565
TU241592 other downstream 2361189 22461991 ~ 22465702 (+) False LOC103025565

Expression Profile