RNA id: TU241076


Basic Information

Item Value
RNA id TU241076
length 1180
lncRNA type inter_gene
GC content 0.47
exon number 5
gene id G177955
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20157847 ~ 20163869 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaGAAAAGTACATAGTAttcatgaaaaaatatattccaTTTGTTCCAATCCGACCATCATTTACTAGAGTGGCTTTCATCCTGATTAATTCTGCTGGAActgttttaaactttaataCGGAGGACTGTTTttaacattataatacattttaagttgcTTTTGTcccacagataaacacactacaatatatatatatttactccaAAGATTCCAAAGATGGTACGTGTTCATCATTCCATGAAGTCAGAGAGTCTTTTGAACTTGCCGGTTTGTCAGGTTTGAAGCTATATAAAAGACGAAGCACATCACTGAAATACTTGGCAATGGTAAAGTACGAGTCTCTGCGTCACACGTGCGCCTCCCTCCCTCAGTGCCTCATCGTGAGCGTGTCAGTATCATGTGCTCCTCCAATCACACGCAATCACCCAGTTTTTGGAAGTGGAGATGCTTTATACTTGTGGGCTCTTGTTATCAGGTATGGAGGTCTTGCTTTGTTGGCGATTAGAcatCTGATTCTTTtggagaaaaagaaatgaaatctCCATTTTTCTTTGCACCTTCTCTCTGGCTCCTTAATTTGGCTTTTCTCTTCTGTCGTAAATAGGCGAAGACGAAGGCCATGATGATGAGTCCACAGAGGAACCCCAGACACCCCAACGTGAGAGGGACAGACAAGCCGCCGTTGACCGTCTCCCTGCAGGTGACCCCCCGGTATCCCAGCATACAGTCACACTCCGGCAGCCCGTCCACCGTCACACAGTCCCCATGGCCATTACACCGCACAGCACCACAGTCCATCACGCTCTGACTCCATCTGTCCCTCACAGGGTCCGAGTTCAGGCTGGACATGTCCCACCTTCTTCCTGTGGATGACTGCAAGCTCTAACTCGCCGAATGTCCTCAGAGGGCAGGGTCTGTTCTAGTAGGGTGCAGTGGGGTCAGTCCGGGTGGAAGGTTGTGGTGGAGGTGGACAGCCAGCAGGTTTTACAGATCCTGCCTGAACTGAGCGAAAGAgcatgaaagaaaagaaagagtgagcgAGTGAAGGAGGAAAGCAGGTAGAAGAacaacagtcagtcagtcaatcagagGCAGACAGAGAACAAGAACAAGCCAAGTCTTGAATAACTGAGAACAGATCAGAGCAGGAAGGCTGAGCTCAGCCACAGCTCCCCTCCCT

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651458.1 lncRNA upstream 33999 20105334 ~ 20123848 (+) False LOC111195064
XR_002651457.1 lncRNA upstream 33999 20121246 ~ 20123848 (+) True LOC111195064
TU241057 lncRNA upstream 57045 20100576 ~ 20100802 (+) True G177940
TU240988 lncRNA upstream 162680 19990644 ~ 19995167 (+) True G177885
XR_002651456.1 lncRNA upstream 202373 19949596 ~ 19955474 (+) True LOC111195063
TU241106 lncRNA downstream 7416 20171285 ~ 20173721 (+) True G177976
TU241129 lncRNA downstream 35895 20199764 ~ 20203551 (+) True G177995
TU241117 lncRNA downstream 72348 20236217 ~ 20240919 (+) True G177984
TU241183 lncRNA downstream 98017 20261886 ~ 20262774 (+) True G178026
TU241186 lncRNA downstream 123203 20287072 ~ 20287579 (+) True G178029
XM_007260825.3 mRNA upstream 2532 20152461 ~ 20155315 (+) True LOC103027562
XM_007260831.3 mRNA upstream 7729 20149258 ~ 20150118 (+) True LOC103030097
XM_007255022.3 mRNA upstream 61136 20089238 ~ 20096711 (+) True LOC103043854
XM_007255020.3 mRNA upstream 225027 19919877 ~ 19932820 (+) True pum3
XM_022681215.1 mRNA upstream 238870 19896739 ~ 19918977 (+) False LOC103023409
XM_015608721.2 mRNA downstream 65658 20229527 ~ 20257745 (+) True smad2
XM_007260822.3 mRNA downstream 65658 20229527 ~ 20257745 (+) False smad2
XM_015608718.2 mRNA downstream 217820 20381689 ~ 20395156 (+) False skor2
XM_022681238.1 mRNA downstream 222661 20386530 ~ 20395156 (+) False skor2
XM_007260820.3 mRNA downstream 222662 20386531 ~ 20395156 (+) True skor2
TU241070 other upstream 18283 20138822 ~ 20139564 (+) True G177950
TU241050 other upstream 63985 20089261 ~ 20093862 (+) False LOC103043854
XR_002651455.1 other upstream 382056 19750942 ~ 19775791 (+) False LOC103042206
TU240867 other upstream 435458 19720301 ~ 19722389 (+) False LOC111194983
TU240134 other upstream 1613850 18539898 ~ 18543997 (+) False LOC103024155
TU241506 other downstream 2085275 22249144 ~ 22301065 (+) False LOC103046694
TU241591 other downstream 2296523 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other downstream 2296523 22460392 ~ 22465702 (+) False LOC103025565
TU241592 other downstream 2298122 22461991 ~ 22465702 (+) False LOC103025565
XR_002651461.1 other downstream 2322954 22486823 ~ 22491503 (+) False hnrnpdl

Expression Profile