RNA id: TU241186


Basic Information

Item Value
RNA id TU241186
length 508
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G178029
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20287072 ~ 20287579 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggagaggaccgacattaactgaactgatcaggggtggagtgatcaaaaggaagaagtattaattaaaaattattgtgtaggccccttaggactattttttactgatggaatatatctggtccatgtccttttagtaaaagctcataataccatttttaggtcaccaacagtcattttgcagaatttgtgcactctttgttcaattttaaatccattaaataaataaaaaatatatcatataaaagagtgcatttattacaaaaaagacatgaaatcttaaataaaaaaagatatacaaaagggtttttaatttggctgtattaaaagaatgacatatgtaggattGTGATAAtttaattgtagtgtgtaagtggttcacatgtggttattttagattttttgtaaacctgttttaaaatgtaagagatactgaaccttcgttgggctggtgggacggctttaagcggacagaggaaaatatcccttatttttaaatctaaaacttgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241183 lncRNA upstream 24298 20261886 ~ 20262774 (+) True G178026
TU241117 lncRNA upstream 46153 20236217 ~ 20240919 (+) True G177984
TU241129 lncRNA upstream 83521 20199764 ~ 20203551 (+) True G177995
TU241106 lncRNA upstream 113351 20171285 ~ 20173721 (+) True G177976
TU241076 lncRNA upstream 123203 20157847 ~ 20163869 (+) True G177955
TU241192 lncRNA downstream 43655 20331234 ~ 20332003 (+) True G178035
TU241203 lncRNA downstream 108803 20396382 ~ 20399165 (+) False ier3ip1
TU241220 lncRNA downstream 133790 20421369 ~ 20424714 (+) True G178055
TU241262 lncRNA downstream 314872 20602451 ~ 20602789 (+) True G178088
TU241265 lncRNA downstream 337200 20624779 ~ 20625028 (+) True G178091
XM_015608721.2 mRNA upstream 29327 20229527 ~ 20257745 (+) True smad2
XM_007260822.3 mRNA upstream 29327 20229527 ~ 20257745 (+) False smad2
XM_007260825.3 mRNA upstream 131757 20152461 ~ 20155315 (+) True LOC103027562
XM_007260831.3 mRNA upstream 136954 20149258 ~ 20150118 (+) True LOC103030097
XM_007255022.3 mRNA upstream 190361 20089238 ~ 20096711 (+) True LOC103043854
XM_015608718.2 mRNA downstream 94110 20381689 ~ 20395156 (+) False skor2
XM_022681238.1 mRNA downstream 98951 20386530 ~ 20395156 (+) False skor2
XM_007260820.3 mRNA downstream 98952 20386531 ~ 20395156 (+) True skor2
XM_007260817.3 mRNA downstream 108798 20396377 ~ 20399165 (+) True ier3ip1
XM_007260818.3 mRNA downstream 115915 20403494 ~ 20407568 (+) False hdhd2
TU241070 other upstream 147508 20138822 ~ 20139564 (+) True G177950
TU241050 other upstream 193210 20089261 ~ 20093862 (+) False LOC103043854
XR_002651455.1 other upstream 511281 19750942 ~ 19775791 (+) False LOC103042206
TU240867 other upstream 564683 19720301 ~ 19722389 (+) False LOC111194983
TU240134 other upstream 1743075 18539898 ~ 18543997 (+) False LOC103024155
TU241506 other downstream 1961565 22249144 ~ 22301065 (+) False LOC103046694
TU241591 other downstream 2172813 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other downstream 2172813 22460392 ~ 22465702 (+) False LOC103025565
TU241592 other downstream 2174412 22461991 ~ 22465702 (+) False LOC103025565
XR_002651461.1 other downstream 2199244 22486823 ~ 22491503 (+) False hnrnpdl

Expression Profile