RNA id: TU241192


Basic Information

Item Value
RNA id TU241192
length 416
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G178035
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20331234 ~ 20332003 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcggactataaggcgcacttaaaaacttttaattttcacaaaaattgacagtgcgtcttataatacggtgcgccttttgtatggattttactcgtcaggttgtaaggagcagtaaacacacactccgtgcagcgttatagagagtttcagtgctatacagagtccagagccgtgcagctccgaggctggagcagcaatagcattagctagatgctaaccgctaagctagctagcttattcactgttcagagatcagtattatctaaattttactcgtcaggttgtaaggagcagtaaacacacactccgtgcagcgttatacagagtttcagtgctatacagagtccagagccgtgcagctccgaggctggagcagcaaatagcattagctagcttattcactgttcagagatcag

Function

GO: NA

KEGG:

id description
ko04966 Collecting duct acid secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241186 lncRNA upstream 43655 20287072 ~ 20287579 (+) True G178029
TU241183 lncRNA upstream 68460 20261886 ~ 20262774 (+) True G178026
TU241117 lncRNA upstream 90315 20236217 ~ 20240919 (+) True G177984
TU241129 lncRNA upstream 127683 20199764 ~ 20203551 (+) True G177995
TU241106 lncRNA upstream 157513 20171285 ~ 20173721 (+) True G177976
TU241203 lncRNA downstream 64379 20396382 ~ 20399165 (+) False ier3ip1
TU241220 lncRNA downstream 89366 20421369 ~ 20424714 (+) True G178055
TU241262 lncRNA downstream 270448 20602451 ~ 20602789 (+) True G178088
TU241265 lncRNA downstream 292776 20624779 ~ 20625028 (+) True G178091
TU241271 lncRNA downstream 389070 20721073 ~ 20721391 (+) True G178097
XM_015608721.2 mRNA upstream 73489 20229527 ~ 20257745 (+) True smad2
XM_007260822.3 mRNA upstream 73489 20229527 ~ 20257745 (+) False smad2
XM_007260825.3 mRNA upstream 175919 20152461 ~ 20155315 (+) True LOC103027562
XM_007260831.3 mRNA upstream 181116 20149258 ~ 20150118 (+) True LOC103030097
XM_007255022.3 mRNA upstream 234523 20089238 ~ 20096711 (+) True LOC103043854
XM_015608718.2 mRNA downstream 49686 20381689 ~ 20395156 (+) False skor2
XM_022681238.1 mRNA downstream 54527 20386530 ~ 20395156 (+) False skor2
XM_007260820.3 mRNA downstream 54528 20386531 ~ 20395156 (+) True skor2
XM_007260817.3 mRNA downstream 64374 20396377 ~ 20399165 (+) True ier3ip1
XM_007260818.3 mRNA downstream 71491 20403494 ~ 20407568 (+) False hdhd2
TU241070 other upstream 191670 20138822 ~ 20139564 (+) True G177950
TU241050 other upstream 237372 20089261 ~ 20093862 (+) False LOC103043854
XR_002651455.1 other upstream 555443 19750942 ~ 19775791 (+) False LOC103042206
TU240867 other upstream 608845 19720301 ~ 19722389 (+) False LOC111194983
TU240134 other upstream 1787237 18539898 ~ 18543997 (+) False LOC103024155
TU241506 other downstream 1917141 22249144 ~ 22301065 (+) False LOC103046694
TU241591 other downstream 2128389 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other downstream 2128389 22460392 ~ 22465702 (+) False LOC103025565
TU241592 other downstream 2129988 22461991 ~ 22465702 (+) False LOC103025565
XR_002651461.1 other downstream 2154820 22486823 ~ 22491503 (+) False hnrnpdl

Expression Profile