RNA id: TU241262


Basic Information

Item Value
RNA id TU241262
length 339
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G178088
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20602451 ~ 20602789 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagacctgaattatgtggcaaaaatgtgaaaaaatattaagaagAATAATGAGAATACAACGCATACACAGGAAGACTTGAATATTATAATGTacaatctacaggggttggacaatgaaactgaaacacctggttttagaccacaataatttattgtcccgacagacagttctggtggagacaggagagttgaggtgcacattgaattctgccgtgatttgatcagccgtggttttatgtttttttttctacactccgtgttagcacctgaacatcccttttagacagcttcctcttacagcgttcacagttaatcctgttggatgtggttcatccttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241220 lncRNA upstream 177737 20421369 ~ 20424714 (+) True G178055
TU241203 lncRNA upstream 203286 20396382 ~ 20399165 (+) False ier3ip1
TU241192 lncRNA upstream 270448 20331234 ~ 20332003 (+) True G178035
TU241186 lncRNA upstream 314872 20287072 ~ 20287579 (+) True G178029
TU241183 lncRNA upstream 339677 20261886 ~ 20262774 (+) True G178026
TU241265 lncRNA downstream 21990 20624779 ~ 20625028 (+) True G178091
TU241271 lncRNA downstream 118284 20721073 ~ 20721391 (+) True G178097
TU241287 lncRNA downstream 328992 20931781 ~ 20958483 (+) True G178108
TU241284 lncRNA downstream 634350 21237139 ~ 21264984 (+) True G178105
TU241422 lncRNA downstream 937788 21540577 ~ 21546968 (+) True G178202
XM_007260816.1 mRNA upstream 23666 20428762 ~ 20578785 (+) True galt
XM_007260818.3 mRNA upstream 194883 20403494 ~ 20407568 (+) False hdhd2
XM_022681241.1 mRNA upstream 194883 20403600 ~ 20407568 (+) False hdhd2
XM_015608722.2 mRNA upstream 194883 20404354 ~ 20407568 (+) True hdhd2
XM_007260817.3 mRNA upstream 203286 20396377 ~ 20399165 (+) True ier3ip1
XM_007260812.3 mRNA downstream 239248 20842037 ~ 21177458 (+) True LOC103022731
XM_007260815.3 mRNA downstream 600473 21203262 ~ 21258587 (+) True LOC103023250
XM_007260811.3 mRNA downstream 682457 21285246 ~ 21295849 (+) True cst8
XM_022681245.1 mRNA downstream 723423 21326212 ~ 21369274 (+) False musk
XM_022681242.1 mRNA downstream 733888 21336677 ~ 21369274 (+) True musk
TU241070 other upstream 462887 20138822 ~ 20139564 (+) True G177950
TU241050 other upstream 508589 20089261 ~ 20093862 (+) False LOC103043854
XR_002651455.1 other upstream 826660 19750942 ~ 19775791 (+) False LOC103042206
TU240867 other upstream 880062 19720301 ~ 19722389 (+) False LOC111194983
TU240134 other upstream 2058454 18539898 ~ 18543997 (+) False LOC103024155
TU241506 other downstream 1646355 22249144 ~ 22301065 (+) False LOC103046694
TU241591 other downstream 1857603 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other downstream 1857603 22460392 ~ 22465702 (+) False LOC103025565
TU241592 other downstream 1859202 22461991 ~ 22465702 (+) False LOC103025565
XR_002651461.1 other downstream 1884034 22486823 ~ 22491503 (+) False hnrnpdl

Expression Profile