RNA id: TU241287


Basic Information

Item Value
RNA id TU241287
length 629
lncRNA type intronic
GC content 0.40
exon number 2
gene id G178108
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20931781 ~ 20958483 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATGTTACGCAGCCTggctctccttccacactaccggactctaTTTCCCAGAATCCCCCAGATTATGACATCAATAATAACCCTTCACATTCACCCAATCAtgttacgctccgacgctctgattcacctgttTACTAAATTACTTCCGGTTCATTCTTATCTAAGATTCTGTATTTAAGGCATCCGCTTGTAAGGAAACACTGCGAGGTATTGTCAACTCATGTTGCGTACTAAGCGTTTTCTGGATTactgtttttgccttctcgttacgactCTGTGTTTGGATTttcggtttatgtcttttgttttgcccttgtTGGATTTGGTATATGGTTGGACTGTTTCCCGGTTTAGAACTTGGACTGTATCTTTGACAACGTCTCTGGTTATCGGTGAGATTATTGTTTGTCTTCTGTTAGCAGAACCTGTTAACCTTTCTTATAATAAACCTGCctgtatttttaactcggctcgcgtcactcctctcTACCTGGCGTTTCAtaaacaaacaagtgttaaacaaaccaggtttggtttgagagcatcagttgtaaagttgtgaagaggtagagttacaagtatacagtgaatatcccttttttgagtaatgttctaatccatattatggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241271 lncRNA upstream 210390 20721073 ~ 20721391 (+) True G178097
TU241265 lncRNA upstream 306753 20624779 ~ 20625028 (+) True G178091
TU241262 lncRNA upstream 328992 20602451 ~ 20602789 (+) True G178088
TU241220 lncRNA upstream 507067 20421369 ~ 20424714 (+) True G178055
TU241203 lncRNA upstream 532616 20396382 ~ 20399165 (+) False ier3ip1
TU241284 lncRNA downstream 278656 21237139 ~ 21264984 (+) True G178105
TU241422 lncRNA downstream 582094 21540577 ~ 21546968 (+) True G178202
TU241453 lncRNA downstream 740950 21699433 ~ 21699633 (+) True G178233
TU241476 lncRNA downstream 1014231 21972714 ~ 21973034 (+) True G178254
TU241500 lncRNA downstream 1140836 22099319 ~ 22099558 (+) True G178278
XM_007260816.1 mRNA upstream 352996 20428762 ~ 20578785 (+) True galt
XM_007260818.3 mRNA upstream 524213 20403494 ~ 20407568 (+) False hdhd2
XM_022681241.1 mRNA upstream 524213 20403600 ~ 20407568 (+) False hdhd2
XM_015608722.2 mRNA upstream 524213 20404354 ~ 20407568 (+) True hdhd2
XM_007260817.3 mRNA upstream 532616 20396377 ~ 20399165 (+) True ier3ip1
XM_007260815.3 mRNA downstream 244779 21203262 ~ 21258587 (+) True LOC103023250
XM_007260811.3 mRNA downstream 326763 21285246 ~ 21295849 (+) True cst8
XM_022681245.1 mRNA downstream 367729 21326212 ~ 21369274 (+) False musk
XM_022681242.1 mRNA downstream 378194 21336677 ~ 21369274 (+) True musk
XM_022681243.1 mRNA downstream 378194 21336677 ~ 21369274 (+) False musk
TU241070 other upstream 792217 20138822 ~ 20139564 (+) True G177950
TU241050 other upstream 837919 20089261 ~ 20093862 (+) False LOC103043854
XR_002651455.1 other upstream 1155990 19750942 ~ 19775791 (+) False LOC103042206
TU240867 other upstream 1209392 19720301 ~ 19722389 (+) False LOC111194983
TU240134 other upstream 2387784 18539898 ~ 18543997 (+) False LOC103024155
TU241506 other downstream 1290661 22249144 ~ 22301065 (+) False LOC103046694
TU241591 other downstream 1501909 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other downstream 1501909 22460392 ~ 22465702 (+) False LOC103025565
TU241592 other downstream 1503508 22461991 ~ 22465702 (+) False LOC103025565
XR_002651461.1 other downstream 1528340 22486823 ~ 22491503 (+) False hnrnpdl

Expression Profile