RNA id: TU241500


Basic Information

Item Value
RNA id TU241500
length 240
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G178278
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22099319 ~ 22099558 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctacactgtaaaacatttcaagttggttaaactcagcaacataagttcccctgctgccttaaaaagctgagttaactcaacttgatAAAAACATTTGTATCAACTCAAGATGTTAAGTTAAACAAGTTGTTCAAATACTCATTACTTATTGTTTCAACTTGATGCACTGAGTTAAAACAActcaagtgtttaatttgtcctttttaaaaattgatctgtttagtcaaataaactaacaat

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0006040 amino sugar metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:1901136 carbohydrate derivative catabolic process biological_process
GO:0006022 aminoglycan metabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241476 lncRNA upstream 126285 21972714 ~ 21973034 (+) True G178254
TU241453 lncRNA upstream 399686 21699433 ~ 21699633 (+) True G178233
TU241422 lncRNA upstream 552351 21540577 ~ 21546968 (+) True G178202
TU241284 lncRNA upstream 834335 21237139 ~ 21264984 (+) True G178105
TU241287 lncRNA upstream 1140836 20931781 ~ 20958483 (+) True G178108
TU241502 lncRNA downstream 482 22100040 ~ 22101283 (+) True G178280
TU241504 lncRNA downstream 3191 22102749 ~ 22103046 (+) True G178282
TU241522 lncRNA downstream 213612 22313170 ~ 22314294 (+) True G178289
TU241555 lncRNA downstream 240421 22339979 ~ 22385723 (+) False G178310
TU241549 lncRNA downstream 249420 22348978 ~ 22385553 (+) False G178310
XM_015607071.2 mRNA upstream 134611 21932331 ~ 21964708 (+) True grin3a
XM_022681242.1 mRNA upstream 730045 21336677 ~ 21369274 (+) True musk
XM_022681248.1 mRNA downstream 27563 22127121 ~ 22315307 (+) True LOC103046694
XM_007254085.3 mRNA downstream 223162 22322720 ~ 22334543 (+) False LOC103047607
XM_015607076.2 mRNA downstream 223283 22322841 ~ 22334543 (+) False LOC103047607
XM_007254086.3 mRNA downstream 223439 22322997 ~ 22334543 (+) True LOC103047607
XM_007241062.3 mRNA downstream 321804 22421362 ~ 22453611 (+) True sec31a
TU241070 other upstream 1959755 20138822 ~ 20139564 (+) True G177950
TU241050 other upstream 2005457 20089261 ~ 20093862 (+) False LOC103043854
XR_002651455.1 other upstream 2323528 19750942 ~ 19775791 (+) False LOC103042206
TU240867 other upstream 2376930 19720301 ~ 19722389 (+) False LOC111194983
TU240134 other upstream 3555322 18539898 ~ 18543997 (+) False LOC103024155
TU241506 other downstream 149586 22249144 ~ 22301065 (+) False LOC103046694
TU241591 other downstream 360834 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other downstream 360834 22460392 ~ 22465702 (+) False LOC103025565
TU241592 other downstream 362433 22461991 ~ 22465702 (+) False LOC103025565
XR_002651461.1 other downstream 387265 22486823 ~ 22491503 (+) False hnrnpdl

Expression Profile