RNA id: TU241522


Basic Information

Item Value
RNA id TU241522
length 571
lncRNA type intronic
GC content 0.42
exon number 2
gene id G178289
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22313170 ~ 22314294 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cattgcaccagtaagagcagagtgtgaaggttcaattagcagggtaagagcacagttctgctcaaaatattgcaatgcacacaacattatgggtgacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctggagcatctgtgaccaagacagcaagtctttgtgatgtatcaagagccacggtatccagggtaatgtcagcgtaccaccaagaaggaccaaccacatccaacaggattaactgtggacgctgcaagaggaagctgtctgaaagggatgtacaggtgctaacccggattgtatccaaaaaactaaaaccacggctgatcaaatcatgacagaattcaatgtgcacctcaactctcttgtttccaccagaactgtctgtcgggacattaagttattgtggtctaaaaccaggtgtttcagtttcattgtccaaccactgtttatataatataatggatTAGTTATGAAGTAGTTTTAAACCATTGTCTTCCCAGAGAGTCTAGATATATGCTTCTTTCCTAGTGGTGTttatttatattagttttagGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241504 lncRNA upstream 210124 22102749 ~ 22103046 (+) True G178282
TU241502 lncRNA upstream 211887 22100040 ~ 22101283 (+) True G178280
TU241500 lncRNA upstream 213612 22099319 ~ 22099558 (+) True G178278
TU241476 lncRNA upstream 340136 21972714 ~ 21973034 (+) True G178254
TU241453 lncRNA upstream 613537 21699433 ~ 21699633 (+) True G178233
TU241555 lncRNA downstream 25685 22339979 ~ 22385723 (+) False G178310
TU241549 lncRNA downstream 34684 22348978 ~ 22385553 (+) False G178310
XR_002651466.1 lncRNA downstream 66316 22380610 ~ 22381578 (+) True LOC111195069
TU241567 lncRNA downstream 66342 22380636 ~ 22381462 (+) False LOC111195069
TU241551 lncRNA downstream 70876 22385170 ~ 22386661 (+) True G178310
XM_015607071.2 mRNA upstream 348462 21932331 ~ 21964708 (+) True grin3a
XM_022681242.1 mRNA upstream 943896 21336677 ~ 21369274 (+) True musk
XM_007254085.3 mRNA downstream 8426 22322720 ~ 22334543 (+) False LOC103047607
XM_015607076.2 mRNA downstream 8547 22322841 ~ 22334543 (+) False LOC103047607
XM_007254086.3 mRNA downstream 8703 22322997 ~ 22334543 (+) True LOC103047607
XM_007241062.3 mRNA downstream 107068 22421362 ~ 22453611 (+) True sec31a
XM_022680720.1 mRNA downstream 142025 22456319 ~ 22465729 (+) True LOC103025565
TU241506 other upstream 12105 22249144 ~ 22301065 (+) False LOC103046694
TU241070 other upstream 2173606 20138822 ~ 20139564 (+) True G177950
TU241050 other upstream 2219308 20089261 ~ 20093862 (+) False LOC103043854
XR_002651455.1 other upstream 2537379 19750942 ~ 19775791 (+) False LOC103042206
TU240867 other upstream 2590781 19720301 ~ 19722389 (+) False LOC111194983
TU241591 other downstream 146098 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other downstream 146098 22460392 ~ 22465702 (+) False LOC103025565
TU241592 other downstream 147697 22461991 ~ 22465702 (+) False LOC103025565
XR_002651461.1 other downstream 172529 22486823 ~ 22491503 (+) False hnrnpdl
XR_002651462.1 other downstream 172529 22486823 ~ 22491503 (+) False hnrnpdl

Expression Profile