RNA id: TU241567


Basic Information

Item Value
RNA id TU241567
length 393
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id LOC111195069
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22380610 ~ 22381578 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCTAAGTGTAGCAggaatgtttgcttgttgctagTGGTAAAAGACTTTGGTGAGCGTttgtaaaaccttaaaaaataaGGCAGGCGCTTAAGTCACATTTTAAAAGGCTTGTTTCTGAATTCTGACCGAGCTGAAGGGCATTAAAGAGCGtcttGGAAGATCctaaagaggaggaggagagatgaTCTGGATCAAGTTTTAAGATCTGTTCGAAAATCTTCATTTAATCTTCATGTTTCAAATGCAGACATTTCATGcacatgtaaatatataaccTAAGCAAAGATATATGTAGTGAGTTGATGGAAGAATGGATAATTGTAAAGAATAACTAGTTCCAATGTACCTCATAATGTGCAATACAGCTTTCATGTGCTATTGATGTAAAATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241522 lncRNA upstream 66342 22313170 ~ 22314294 (+) True G178289
TU241504 lncRNA upstream 277590 22102749 ~ 22103046 (+) True G178282
TU241502 lncRNA upstream 279353 22100040 ~ 22101283 (+) True G178280
TU241500 lncRNA upstream 281078 22099319 ~ 22099558 (+) True G178278
TU241476 lncRNA upstream 407602 21972714 ~ 21973034 (+) True G178254
TU241551 lncRNA downstream 3708 22385170 ~ 22386661 (+) True G178310
TU241571 lncRNA downstream 9736 22391198 ~ 22396197 (+) True G178320
TU241604 lncRNA downstream 135069 22516531 ~ 22524073 (+) True G178344
TU241641 lncRNA downstream 223533 22604995 ~ 22605572 (+) True G178368
TU241655 lncRNA downstream 248449 22629911 ~ 22671830 (+) True G178381
XM_007254085.3 mRNA upstream 46093 22322720 ~ 22334543 (+) False LOC103047607
XM_015607076.2 mRNA upstream 46093 22322841 ~ 22334543 (+) False LOC103047607
XM_007254086.3 mRNA upstream 46093 22322997 ~ 22334543 (+) True LOC103047607
XM_022681248.1 mRNA upstream 65329 22127121 ~ 22315307 (+) True LOC103046694
XM_015607071.2 mRNA upstream 415928 21932331 ~ 21964708 (+) True grin3a
XM_007241062.3 mRNA downstream 39900 22421362 ~ 22453611 (+) True sec31a
XM_022680720.1 mRNA downstream 74857 22456319 ~ 22465729 (+) True LOC103025565
XM_007241060.3 mRNA downstream 86975 22468437 ~ 22476305 (+) True tmem150c
XM_007241055.3 mRNA downstream 105361 22486823 ~ 22491503 (+) True hnrnpdl
XM_007241057.3 mRNA downstream 105361 22486823 ~ 22491503 (+) False hnrnpdl
TU241506 other upstream 79571 22249144 ~ 22301065 (+) False LOC103046694
TU241070 other upstream 2241072 20138822 ~ 20139564 (+) True G177950
TU241050 other upstream 2286774 20089261 ~ 20093862 (+) False LOC103043854
XR_002651455.1 other upstream 2604845 19750942 ~ 19775791 (+) False LOC103042206
TU240867 other upstream 2658247 19720301 ~ 19722389 (+) False LOC111194983
TU241591 other downstream 78930 22460392 ~ 22465702 (+) False LOC103025565
TU241593 other downstream 78930 22460392 ~ 22465702 (+) False LOC103025565
TU241592 other downstream 80529 22461991 ~ 22465702 (+) False LOC103025565
XR_002651461.1 other downstream 105361 22486823 ~ 22491503 (+) False hnrnpdl
XR_002651462.1 other downstream 105361 22486823 ~ 22491503 (+) False hnrnpdl

Expression Profile