RNA id: XM_022680720.1


Basic Information

Item Value
RNA id XM_022680720.1
length 3338
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC103025565
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22456319 ~ 22465729 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCATCTGTATCAACCATCTGAATCAACGCCTGCTGACCCGCCACAGCGCACACTGCTCCACAGCGCCCCTCAGCCCTCCGTGCGCAACTGCAGCGGCTCAGCCTCCATCCATCCCCCGGAGACCCAGGCCAGCAGCACCGGCTCTCAGCTGCCGGGTCCTGTATGGATATAAACCCACAGATTTCCCTTTAAATCGGTCGTGGAGATTAAAAATCCTCTTTTCTTGCTGAAGAAATGGTCGCGTTCCCGAAGAGCGAGCTCCGCGCCGCTGCCGGCGGCCGCTGCGAGCCTGAGGGAGCGGAGAGCCGGGAGACGGAGGCTGAATGCGGGGATGCTAAAGAGGAGAAGCGCGGTCAGACCATCGTATGGAGAAACGTGGTGCTGATGGCTTTGCTGCACCTCGCCGCCGTGTACGCGCTGCAGCTCATCCCCAGAGCTCATCCCTTCACCTGGATATGGTCGTACGTGTGCTTCTTAATTACTGGCCTTGGGATAACAGCCGGAGCCCATCGCTTATGGAGCCACAGGTCATACAAAGCCAAATTTCCCCTGAGGATGTTCCTGGCTGCTGCCAACTCCATGGCATTCCAGTGGGATAATCCCCTCTTATTTAAGCTGTTGTATTTGtgtgctgttttattcagatattATAAACTTTCAGTGGTGATGATGTGCTTCGTCGTGCCCACCTTGGTGCCGTGGTACTTCTGGGATGAAAGTATCTGGAACTCGTACTTTCTGCCTGGCATCTTACGCTACACCATTTGTCTCAATTGCACCTGGTTAGTCAACAGTGCTGCCCATATATATGGAAACCGGCCGTATGACAAGTACATCAACCCCCGGGAAAACTGCCTAGTCACTTTTGGAGCCATGGGAGAAGGTTTCCACAACTTCCATCACACTTTTCCTTTCGACTACTCAGCCAGTGAGTTCGGCCTTCGCCTCAACCCCACCACCTGCTTTATCGATTTCATGTGCCTGCTTGGGCTCGCCAGCAACCGCAAAAAAGCCACACCAGAGATGATCAAGTCTCGCAAGCTAAGGACAGGTGATGGAAGCGCTTGAGGAGCCAGAAGTGTTTCACATCTTTTGTCACAGATCGCCAGAACGACATGGCAGCGTTTTTGTGAGAGGTGGAGAAGTGATGAAAAAATCAGTGTGTACTTTGTTTAGAGCATATTTATTTCTCTTCTGTCGCATCTTGTATACTCTAAAGCAAGCTAATCATTGTGACAAGATAGATTTAGATGGAACAGACATATACTTTTGGCTGTCTGATTCATGGCACAGTAGGGTTGTATTGTGAGTATTATTTTGTGTTGACTGTTCTTTATAGCTAAATGGTGATCTATTATCTCTGTCACTCAGTTAAGCAATCAGTGTAACTTTGGTATTTTGCAAAGCATCAATACAAGCTGTAGCATAATTAATAGACTTAGCGCTTTTTCTACTTTACTAacttaaataatcaaataatagtTTTACATTGCCCAGTAATGCCCTAAAAAATTAGCTCTTCAAATGTCTTTCAAAATGGTTGATCAGCCCTGTGGTGGGCTTGCCTTAAATTTGCTGCTTTTGTCATTTGCAATCTCCAAACAAATGAGCACTTTAATGAAAGAATGGCCCTGATATGCATATTCGACAGCACACTGTGCTAATTAATCCCAATGATAACCAGTTAATTTGCACTTTAGCCCTATGAGCCCATATATggtaatgtgaaaaaaatagtaaaatttaaCAAATCTGGACGTAAGAATATTTGATCTTCTTTCAAACTGTATCTATGAATAATGGTGATGCAGTTgcatttattctttcttttaagCCATACCTTCGTggaatgttttgggtcattgtcatgttgcatgaTCCAAACTTTACTGGCTGCTAGCACATGTTAAAACAGCCTGGCAATCAGTTTTATTCTGTTATGTGTTCTTAAtatgtaaattatttagtaGACAGTGGAGTGGGTGATTTATTAAGTGTTTTGAGATTTTTTGTTAGCCACTAAAATACCTATGAACCACATGTGGTTCTTGGCTTTTTCATGACTGtaatgacatgacatgacatgtaaATACATTGCTTTGCATGTATTTACCACTTAGAGAAATTCTCAGAGAGCTGTTTGGATCTGGTCATCTCTacctttgtttatgtatattacCACCATTTTACATAAAGATCCCTGAAAATGAAGCTCAAATGTCCGTATGTTCAGATatgttaaaaaagagaaaagatttTCATGAGGTgtcctaatatttttttttacataactcTAGGTATAGGTGGTCATGCTGTCATGCCACAGCTCTGAAGTGTGAGCTAACATGACAAAAGATCACTAAAATCCAACCCCAGCCAAATGTCACCTTTTGCTTCCTCCCGTTTTCTTCTAATATTAGAATGATGTATGACTATCTTATTGAGTAATTAATCCCATGAGGGCAGCACAGATGTTGTAGGAGagcaaaaaatgtattaaagtcCATGCCAGCCATTTTTATTCCTGAATTCTGTTAGTTTGGTGTTGGCCATTTTATCGACCTGTGCtaactgtttgtgtgtgtgtgttcatgtatgATTTGAGTTTAAGACTTGTGGTAGACTTTTGGACGAGGAGAAAAGGCATGCATGGAAACGAAGGAATGGAGAACTTTGTGTAAATGAGCAGTTTATGGAATGTGATGATGCGTTTGTAGTATGTAGATGCtcttaaatgcattaatatatgGTTATGTAGCTGTGTTGCTCTGTGAATGTGAGTGCATGTAACTGTTTCTGTCTGTAACAGATGCTATAAGAATGATGTTGCCTGAAGATCTTCAGAtgtttgctgattttttttaaaacttatttgCACCACAGCATTGCTAAATATGCTGACATGGCTTGGCTGGTGTTTCAGACTCACTAAAGATACTCTATATTaacaaaagtactgggacaaaCCTTGTAAATTAATGTGTAATCGGATGGCACCCCTGCCAGTCAGTTGGTGAAATGTCTTCCTATCTTCTCTTAGATACGCCACCTTCAACTGGGAgtggttgttattattataaagtggaaCATTTCGGAACATCTGCAACTTAGCAACCTGCTGGTAGAGCTGCAAAAGAGGACTGACTCCAAACTAATTGCTATGAATTTAGAATTGATATAATGGATGTCATAATggggtgtcccaatacttttgtccatttgcTGGTAGTTCCTGCCATAAAGTTCTAGAGGACGAAATCATTCAGTAATTGATTCTAACAGTAGACAGGGTAAGAGTAGAACCAGAGTACgtaataaattatttcaaaCAATAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241571 lncRNA upstream 60122 22391198 ~ 22396197 (+) True G178320
TU241551 lncRNA upstream 69658 22385170 ~ 22386661 (+) True G178310
TU241549 lncRNA upstream 70766 22348978 ~ 22385553 (+) False G178310
TU241604 lncRNA downstream 50802 22516531 ~ 22524073 (+) True G178344
TU241641 lncRNA downstream 139266 22604995 ~ 22605572 (+) True G178368
TU241655 lncRNA downstream 164182 22629911 ~ 22671830 (+) True G178381
TU241669 lncRNA downstream 242019 22707748 ~ 22708401 (+) True G178392
TU241671 lncRNA downstream 248008 22713737 ~ 22720806 (+) True G178394
XM_007241062.3 mRNA upstream 2708 22421362 ~ 22453611 (+) True sec31a
XM_007254085.3 mRNA upstream 121776 22322720 ~ 22334543 (+) False LOC103047607
XM_015607076.2 mRNA upstream 121776 22322841 ~ 22334543 (+) False LOC103047607
XM_007254086.3 mRNA upstream 121776 22322997 ~ 22334543 (+) True LOC103047607
XM_022681248.1 mRNA upstream 141012 22127121 ~ 22315307 (+) True LOC103046694
XM_007241060.3 mRNA downstream 2708 22468437 ~ 22476305 (+) True tmem150c
XM_007241055.3 mRNA downstream 21094 22486823 ~ 22491503 (+) True hnrnpdl
XM_007241057.3 mRNA downstream 21094 22486823 ~ 22491503 (+) False hnrnpdl
XM_007241056.3 mRNA downstream 21094 22486823 ~ 22491503 (+) False hnrnpdl
XM_022681263.1 mRNA downstream 27711 22493440 ~ 22502159 (+) True LOC103022948
TU241506 other upstream 155254 22249144 ~ 22301065 (+) False LOC103046694
TU241070 other upstream 2316755 20138822 ~ 20139564 (+) True G177950
TU241050 other upstream 2362457 20089261 ~ 20093862 (+) False LOC103043854
XR_002651455.1 other upstream 2680528 19750942 ~ 19775791 (+) False LOC103042206
TU240867 other upstream 2733930 19720301 ~ 19722389 (+) False LOC111194983
XR_002651461.1 other downstream 21094 22486823 ~ 22491503 (+) False hnrnpdl
XR_002651462.1 other downstream 21094 22486823 ~ 22491503 (+) False hnrnpdl
XR_002651459.1 other downstream 27711 22493440 ~ 22502159 (+) False LOC103022948
XR_002651460.1 other downstream 27711 22493440 ~ 22502159 (+) False LOC103022948
TU241624 other downstream 78911 22544640 ~ 22546130 (+) True G178352

Expression Profile