RNA id: TU241624


Basic Information

Item Value
RNA id TU241624
length 1394
RNA type TUCP
GC content 0.37
exon number 3
gene id G178352
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22544640 ~ 22546130 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcCAGctacctaaataaataaataaataaatatagcagcacattcataataaaaacaaattattatatgCAGGATCATAAGAAAcagattttagttttagtctttgGAACACTTTGCTAGAGAGACTACTGTAGCACAGTTGTAATACACTGTTGTAGGTCAGGAGGGCTCATTAAAATCcagtttaaatatatgtaacaaCTAATTTAAAGCTGGCCATGGCATCACTTCTAGCCTGAGTAAATGCCTGGTCAAACATAAAATACATCTAAAAAAGGTATTATCTGACAGCCTGAAAGAGGACAGTTTTGGGAGAGGAGGAGCTGGTAAAGAGCAGTTTTACTTTGTGTGGTGTGTAAAATGTcctaaataagtaataaaataagACATTACATTTTGTGTTATTATACAGAGAATAAAGCACCAAAAAAGTACTGAGTTCTTTCATTACAGTTTGAAACGTGATCAGTACCGAACACTGAAGGTTAATAATTTTCCTATCCAACTTGAAGGAAAATGATGGTGTATTTATAAGCTTTTAAACAGTATggtatattttaaatgattaatgtaCATTTAGGTATGTCTTGAGCAAAAGTTATTTGTCTTTGCAGCCTGTCAAGTTTTTCTCATGCCTTTTTATCTTATAAAGCTGAAACCAGCTGTGATTACATTTTATgccaaatatatatatatattataccaaACAAAGTAAGCGCTGACCCACAATTCATTTCACAATTTACCCACTGACACAGTTAATGATTTCACTCTACACACCTTGCAGTGTGCCGTCTCTAGCAAGGCTGAGTGTCGGCTACTAAAACTAGCATAAATCAGTACAAGCAGCCTTACTGCCAGTTTCTGCTCATCACAGTTAGTCATTTCAGATAACAGTACACAAGCGGAGAACTGAAGAGCAGCTTCATCTGGAGAGGCTCAGCTGTTGAGCTCAGCTAGAACTACTCTCAGCTCATTACTGAGAATGTGGTTTTTCTCCAGCGTCATTTGGCAGCGATCTGTGGCCACAACATCATCGAGCACCGAGTACAGGCCGAGCCAGTGCCAAGAGGATGGAGGGACAGGAAAAggaggaaaggaaaaaagagagagagagaaagaaaaggagggaGGGGTTAGTGCAGTTAAACAGCAGAAGACATCGAAGAGTAGAGCAGGAGCGAGGGCATCAACAACTGGAGATTCTAGAAAAGGGAGGCAGAACTGCtatacattcattttaatgtacactgatcagccattaCATCAAAACCACTGCCAGGACAAATTAATTTTCattgatattaaatatcataGCTATTAAATAGAATTAATTTTTCaattgttttctttcatctgttttctctttttttttgttctattttactTATAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241604 lncRNA upstream 20567 22516531 ~ 22524073 (+) True G178344
TU241571 lncRNA upstream 148443 22391198 ~ 22396197 (+) True G178320
TU241551 lncRNA upstream 157979 22385170 ~ 22386661 (+) True G178310
TU241549 lncRNA upstream 159087 22348978 ~ 22385553 (+) False G178310
TU241641 lncRNA downstream 58865 22604995 ~ 22605572 (+) True G178368
TU241655 lncRNA downstream 83781 22629911 ~ 22671830 (+) True G178381
TU241669 lncRNA downstream 161618 22707748 ~ 22708401 (+) True G178392
TU241671 lncRNA downstream 167607 22713737 ~ 22720806 (+) True G178394
TU241801 lncRNA downstream 384093 22930223 ~ 22930945 (+) True G178472
XM_022681261.1 mRNA upstream 16557 22519419 ~ 22528083 (+) True LOC111195066
XM_022681262.1 mRNA upstream 29055 22509888 ~ 22515585 (+) True LOC103022635
XM_022681263.1 mRNA upstream 42481 22493440 ~ 22502159 (+) True LOC103022948
XM_007241052.3 mRNA upstream 42481 22493440 ~ 22502159 (+) False LOC103022948
XM_007241051.3 mRNA upstream 42481 22493440 ~ 22502159 (+) False LOC103022948
XM_007255340.3 mRNA downstream 293378 22839508 ~ 22863383 (+) True ankrd55
XM_022681258.1 mRNA downstream 319011 22865141 ~ 22880314 (+) True il6st
XM_007255282.3 mRNA downstream 362663 22908793 ~ 22928244 (+) True slc38a9
XM_022680721.1 mRNA downstream 418863 22964993 ~ 22966528 (+) True LOC111194992
XM_022680703.1 mRNA downstream 424292 22970422 ~ 22973005 (+) True LOC111194985
XR_002651459.1 other upstream 42481 22493440 ~ 22502159 (+) False LOC103022948
XR_002651460.1 other upstream 42481 22493440 ~ 22502159 (+) False LOC103022948
XR_002651461.1 other upstream 53137 22486823 ~ 22491503 (+) False hnrnpdl
XR_002651462.1 other upstream 53137 22486823 ~ 22491503 (+) False hnrnpdl
TU241591 other upstream 78938 22460392 ~ 22465702 (+) False LOC103025565
TU241665 other downstream 142871 22689001 ~ 22709557 (+) True G178388
TU241823 other downstream 417317 22963447 ~ 22964989 (+) True G178485
XR_002651470.1 other downstream 1157857 23703987 ~ 23707849 (+) True LOC111195073
TU242273 other downstream 1901750 24447880 ~ 24454622 (+) False LOC103032894
trnam-cau_40 other downstream 1955744 24501874 ~ 24501945 (+) True trnam-cau_40

Expression Profile