RNA id: TU241655


Basic Information

Item Value
RNA id TU241655
length 1722
lncRNA type inter_gene
GC content 0.49
exon number 14
gene id G178381
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22629911 ~ 22671830 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGTGTCCCGTGTGCATCTGGCCACTAGTGATCTGCTGCTTGGCCTGAGGTATGGATCCCATCTGGAAGCTTCCTTGACCACCAGCACCTGAACGCATGATGACCGGCATAGCCACAGAGCCTGTCTCCACCTTCCCCACCTtgttgaactgctgctgcatcaCTGTTGACTTTAGGTGAAACAGAATCTTCCAGCATGGTCGATTCCTCGTCTCCTTCTAGGCCAAAGTGGTCTTTGCTCTTTTTCTTTTTAAGGATGATGTCAATGTAGCCAGCAATCAGCTGTGCAATCTGCTCTCCTTCAGTGGTCTGGACTGAGTAGTAGCCATCCTGATAATCTCCAAAATCCAGAGTGAAGCTCTTTGGGGAAGCAGCCCAACGCTTGATGTTTGTCAGGCTCCACTCTTGCATCACCTCCTTGGTCTTCTCGTCCACTCTCATCACGCTCTCCTTGGTGATGCCCAGCAGGCGAGGGACCAGCTTGTTCTTGCCCTTCATTTTCTCctttacTAGGAAGAAGGACACTCCATAGGTTTTGAGAGATCGGGCCAGCTTGACATAGCTGACTTTGGCCTCAATCTCAGTCATATTTTGGCAGTTTTTGTGTGCCTGAAAGATCTTTTTCTCGCCTTTGTTCTTGATGTACTCTTTGGGCAGGAATTCTTTCAAATCAAGGAATCCTGGTTTGTGTTTAGATTCATTGTGGTCACCGAACTGGATCTGGCACTGATAACCGGCGAACTCGCAAGCCTTGTCAAAGGACACAGGGTGAGATCCATTCAGAATATCATCTCGAGCCTGTACATATAGTAGATTAAGCTGAACTGGATCTCTGGAGTCCACATTCTGGTCAGAGTAGAAGAACTTTCTCCTGAGGAGCAACATCTCTGTCTCCTCCACCCCCTGCTCACGAAGCGTCCGTCCATGATCCAACCAGTTTAactcatcatcagtgTGAAGCTTCTGCTTAAGTTTCTCCATCTTTTTGTCATCCCTCAGAAGGGTTTTGTCTCTCTTCAGTGTTCCTGTTgtctcctccttcttctcttcACCAATATCTCGCACCAACGAATACTCATCATAGTTTGTGATGCCTATTCTGGCACAAATGGTCATGAGCATGTCACTGACAATTTTAGAGTCGTCCACCATGACGGTTTTCACCGTCCCATCCAACATGCGGATCTTGAGCGGCCTCTGTTTCTTCTTGTAGTCGAGTGTGTCCCCATTTCTCAGCATGTAGTAGTCCAAGGCTTTCCCTGCTTCCAGCCAAATGCCTTTCTTTGGGTCTTCATCTGACAGGAACAGGCCATAATCGTTGGGCTGGCCGAGCTGTGCTTCTGGAACTCTCTCCCTGATGATTCGACAAGCGTCATACACCATGGTGGAGGGCTCAAACTGCATAGTTTTCACCACATTCCCCACGCCGATCTTTAGTGACAGCGCCACCATGTCTGCGCTTCTGTGCCTACGTCACTGCTACacCTGATGGAATCTTCTACAGATGGGAGTGGGCCACCCAGAGGGATGTGGCTGTCTGGGGTCTTCTAATGTATCTCCCCGCTTTCCTCGACCTCCGGCCGTCCACCTTCGGACTACAGTCGGTGTAAATATAGTCCCGTTCCCCAGTCAAAGTGGTGTAAGTTCCAGAAATGTTGGTAAAATGTCAGATTCTGGgttttttccttgcctccgttTGTCTGGTTGAGGCAGCGTCAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241641 lncRNA upstream 24339 22604995 ~ 22605572 (+) True G178368
TU241604 lncRNA upstream 105838 22516531 ~ 22524073 (+) True G178344
TU241571 lncRNA upstream 233714 22391198 ~ 22396197 (+) True G178320
TU241551 lncRNA upstream 243250 22385170 ~ 22386661 (+) True G178310
XR_002651466.1 lncRNA upstream 248333 22380610 ~ 22381578 (+) True LOC111195069
TU241669 lncRNA downstream 35918 22707748 ~ 22708401 (+) True G178392
TU241671 lncRNA downstream 41907 22713737 ~ 22720806 (+) True G178394
TU241801 lncRNA downstream 258393 22930223 ~ 22930945 (+) True G178472
TU241803 lncRNA downstream 263653 22935483 ~ 22941621 (+) True G178474
TU241808 lncRNA downstream 268774 22940604 ~ 22941149 (+) True G178476
XM_022681261.1 mRNA upstream 101828 22519419 ~ 22528083 (+) True LOC111195066
XM_022681262.1 mRNA upstream 114326 22509888 ~ 22515585 (+) True LOC103022635
XM_007241051.3 mRNA upstream 127752 22493440 ~ 22502159 (+) False LOC103022948
XM_007255340.3 mRNA downstream 167678 22839508 ~ 22863383 (+) True ankrd55
XM_022681258.1 mRNA downstream 193311 22865141 ~ 22880314 (+) True il6st
XM_007255282.3 mRNA downstream 236963 22908793 ~ 22928244 (+) True slc38a9
XM_022680721.1 mRNA downstream 293163 22964993 ~ 22966528 (+) True LOC111194992
XM_022680703.1 mRNA downstream 298592 22970422 ~ 22973005 (+) True LOC111194985
TU241624 other upstream 83781 22544640 ~ 22546130 (+) True G178352
XR_002651459.1 other upstream 127752 22493440 ~ 22502159 (+) False LOC103022948
XR_002651460.1 other upstream 127752 22493440 ~ 22502159 (+) False LOC103022948
XR_002651461.1 other upstream 138408 22486823 ~ 22491503 (+) False hnrnpdl
TU241665 other downstream 17171 22689001 ~ 22709557 (+) True G178388
TU241823 other downstream 291617 22963447 ~ 22964989 (+) True G178485
XR_002651470.1 other downstream 1032157 23703987 ~ 23707849 (+) True LOC111195073
TU242273 other downstream 1776050 24447880 ~ 24454622 (+) False LOC103032894
trnam-cau_40 other downstream 1830044 24501874 ~ 24501945 (+) True trnam-cau_40

Expression Profile