RNA id: TU241718


Basic Information

Item Value
RNA id TU241718
length 2198
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G178416
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22486845 ~ 22491505 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCACTGTTTTGATACCCCAATTTTAATATTCCCTTTATCCAAAACTGAAGgaaaaagacaacaaaaacaaatgacATTTCCAAATAAAGATATAAGAACACACCAGTACAACCCTACAGGTTCTACCGCATCAACGCACTGGATAAGAAACTTGGAAACAATATTTACAAGGTCAGACACACTCAATGTCTTCATCTACAGATGACAACCAAATAAAGGTACTTTAAAAACAAGATGCTCTTTGATTAAGAAGGACAGGGTATCCACAAGCTGCCTCCTGGGTACAAACTCAGTCAGCCTCCTCACCTAAAAGAGAGGAGACAGAACAACAATCAATAATTTCTATAACAAGTATTTAACTAAAATGATCACCTTCCATGTTTCTCTGTTTAACATCTTGAGCTGTCGATTTTAAGCTATTAAACACTTCACCATTCAAAATTAAAGATCATATGTACAACTTATGAGTTTCAGAAAGCAGCTCTTCAGCCAGGAAAAGCTTTAGCTCAACTGGGTTGGTGGATAATTGCACCAAAACAGAGCACTTCCAAACAAAGATAATTCACTATCCTATCAGATATAATAGGACTTTTACCAGTCAGTAACTGCATTCGAGTTGGTAGTTTATGAGTCAGCTTTTTATGGCTTCATAAAACTGGTTTACATATGATCTTTATAAGCTATGTTTTAAGGGAAAAGCTTGAGGTGTACCATTTGAAGTTCTCTATGGGTTCTAAAGAAAAAGCAAGCATTATGAGTTTCTGCAGTTTACAGGATTGGAGACCGTTCATAGGAGAacgaaaagaaaaataaataaattaaaatcactGATGCTCCAGAACTGAAATACAAGAAcactaaaattaataaaagagaATACAACAAACAGTTAAATCACTTAGGTTTCACTGTTAAATACCTGtaaaaaattcatttaaaaaactgttaaagAAAGCATTGACAACTTAAGGGAAAATGAGCGATCTCCTTTTTAATGTctgttctttgtttttaaacGCTGGTACAGGAAGTTTGAAGAGACCATACCACAGGACAGCGTTTTCTTGTGCATGCCGTGCTCTCTGCCCGCTATGTGCGACGCCCAGAGAATTTCGTGGTCAGGTGACACACGGCCTGCAATGAAGTCCCCCGCTGGCAGGTACAAACAAGTACAATATCAGAATTAgggaaagaatgaaaaaaaaaaaaataaggaggtGCCCTTACTTTGTACCCTTTAGCAGTACTTTACCTGTTAGCATTGCTATCAACACTATCTTATTTCCTTATGATCACCTGTTAAAAAGCAGGGAGGAAAATGGAAACCAATCTACAGAAAAACGCTTATGTTTTTCTGGAGAGctttaaaaccaaaaataaggcacaccactaacacaagcattattaaattataattaaagatCTATAGACAAATCCCCAAATTACTCAACATGGGGTGCATGATAATGCATACCACTTGTTTTAGGATAATCAGTTTGTGTCTATTGATCTTTAAATTGTATACAAGAGGACAGATGTAAGGCCAAAGATGCAGTCTTACCATAACTCTTAGCAGGTCATGTCATTTCGTCAATATGGCTGGTAGTTGTTCTGATGATTTCCACCCTCCCTGGAGGCCTTGCCGTAACTGCTGGGCTGacctattaaaaatatTGTTGTAGTCATCATACCCTTGTCCATATCCGTAATTCTGATAGTTGTAGCCTGAATAGTCGTACCCAGAGTAGCCATTATATCCCTGGTTGTATCCATTGCCATAGCTACCATAGTTTTGTCCGTAATAATTGTTGTAACCCTGGTTGTATCCTTGACCTTGCCCTcCAAAGCCCCGGTCACTTCTGCCCTGCTGCTGTCTGTAGACTTCTTTAGGCTGGGCAACTTTAACTTCACACTAAAAAACATacccacattaaaaaaaaaagtttaatttagacCTTATTGGACTAGCCATGCTCGTAAATAAACGCAGTAAACCAACCTTTCCACTTCCAATTTGGTGGTATCTGTTTTCCAAAAGCTTCTGAACAGGCTCTTCTTCCACATACGTTACAAAGCAGAATCCTCGCCTCTCATTTGTCTTACCATCCACAGGAAGTTCAATGTTTTCAATCTGTTAGGAACACACATGCCAACCACTTTAGCACTAGCATGGACTCATACAAGTTAACACTTCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241735 lncRNA downstream 26616 22460655 ~ 22462274 (-) True G178427
TU241706 lncRNA downstream 35271 22446542 ~ 22453619 (-) True G178409
TU241707 lncRNA downstream 41484 22445592 ~ 22447406 (-) False G178409
TU241728 lncRNA downstream 47496 22439163 ~ 22441394 (-) True G178423
XR_002651464.1 lncRNA downstream 92707 22391187 ~ 22396183 (-) False LOC111195068
TU241721 lncRNA upstream 1951 22493456 ~ 22499247 (-) True G178417
TU241745 lncRNA upstream 19544 22511049 ~ 22547980 (-) True G178436
TU241750 lncRNA upstream 24156 22515661 ~ 22523609 (-) True G178440
TU241751 lncRNA upstream 24156 22515661 ~ 22523609 (-) False G178440
TU241752 lncRNA upstream 24156 22515661 ~ 22523609 (-) False G178440
XM_007241058.3 mRNA downstream 4121 22478713 ~ 22484769 (-) True enoph1
XM_022681249.1 mRNA downstream 111958 22343456 ~ 22376932 (-) True snx30
XM_007254081.3 mRNA downstream 449953 21974507 ~ 22038937 (-) True plppr1
XM_022680719.1 mRNA downstream 565875 21922330 ~ 21923015 (-) True LOC111194991
XM_007254078.3 mRNA downstream 823164 21545217 ~ 21665726 (-) True epha5
XM_007241054.3 mRNA upstream 9949 22501454 ~ 22506543 (-) False LOC103023660
XM_022681265.1 mRNA upstream 9964 22501469 ~ 22509783 (-) False LOC103023660
XM_007255294.3 mRNA upstream 50459 22541964 ~ 22578431 (-) False LOC103044350
XM_007255292.3 mRNA upstream 50459 22541964 ~ 22578429 (-) False LOC103044350
XM_007255298.3 mRNA upstream 50459 22541964 ~ 22561493 (-) True LOC103044350
TU241733 other downstream 32111 22455497 ~ 22456779 (-) True G178426
TU241489 other downstream 555059 21933519 ~ 21933831 (-) True G178267
TU241386 other downstream 1193057 21291522 ~ 21295833 (-) True G178173
XR_002651453.1 other downstream 3360768 19119786 ~ 19128122 (-) False LOC103035567
TU240722 other downstream 3396744 19091146 ~ 19092146 (-) True G177704
TU241723 other upstream 9813 22501318 ~ 22506501 (-) True LOC103023660
trnam-cau_23 other upstream 39103 22530608 ~ 22530679 (-) True trnam-cau_23
trnam-cau_24 other upstream 39319 22530824 ~ 22530895 (-) True trnam-cau_24
trnam-cau_25 other upstream 39535 22531040 ~ 22531111 (-) True trnam-cau_25
trnar-ccu_29 other upstream 39613 22531118 ~ 22531190 (-) True trnar-ccu_29

Expression Profile