RNA id: TU241808


Basic Information

Item Value
RNA id TU241808
length 515
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G178476
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22940604 ~ 22941149 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCGCGCATGCGCTCTTCCCCCCTccccccgttttttttttttttttttaaattggtctTGTGGGAACACACCGcttaaattaatttAAAGCCAGTTGACTTTTTAACATTAGCCAGATTACCAtactttaattcagtattaataagaTTCTGAAGTTAAATATCTACAAAAACCCTGCGGGATTAGACCGGAGTACCGAGAGGAGCTCTTTCAGTCCTGTTGGGTATTTtaactagcgttagctaactgACTGTTTCAGCTCTCGGTGAAACGCGATCTTATTACTGAACTACAGCGTGGTTTAAAAGCTGCAGCTGATTGATATTATGCTGGGAGAGGAGCTCGTGAATCAGCTCTTAAACAGCATGAGCaggtgctgctgcaggtaatcgagctaactgtagctaattaCAACTGCTCGTtttaagatagctaacgctagcgtGTTAATGGCGAATAACGCtgtaagatagctaacgctagcgagCTAGCGAGTGGGGGATGGCTGGCTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241801 lncRNA upstream 9659 22930223 ~ 22930945 (+) True G178472
TU241671 lncRNA upstream 219798 22713737 ~ 22720806 (+) True G178394
TU241669 lncRNA upstream 232203 22707748 ~ 22708401 (+) True G178392
TU241655 lncRNA upstream 268774 22629911 ~ 22671830 (+) True G178381
TU241641 lncRNA upstream 335032 22604995 ~ 22605572 (+) True G178368
TU241809 lncRNA downstream 1977 22943126 ~ 22943349 (+) True G178477
TU241817 lncRNA downstream 9814 22950963 ~ 22957159 (+) True G178482
TU241944 lncRNA downstream 319422 23260571 ~ 23263280 (+) True G178578
XR_002651468.1 lncRNA downstream 333300 23274449 ~ 23348016 (+) False LOC111195072
XR_002651469.1 lncRNA downstream 333300 23274449 ~ 23338775 (+) True LOC111195072
XM_007255282.3 mRNA upstream 12360 22908793 ~ 22928244 (+) True slc38a9
XM_022681258.1 mRNA upstream 60290 22865141 ~ 22880314 (+) True il6st
XM_007255340.3 mRNA upstream 77221 22839508 ~ 22863383 (+) True ankrd55
XM_022681261.1 mRNA upstream 412521 22519419 ~ 22528083 (+) True LOC111195066
XM_022681262.1 mRNA upstream 425019 22509888 ~ 22515585 (+) True LOC103022635
XM_022680721.1 mRNA downstream 23844 22964993 ~ 22966528 (+) True LOC111194992
XM_022680703.1 mRNA downstream 29273 22970422 ~ 22973005 (+) True LOC111194985
XM_022681271.1 mRNA downstream 53940 22995089 ~ 23187224 (+) False LOC103038592
XM_022681270.1 mRNA downstream 53941 22995090 ~ 23187224 (+) True LOC103038592
XM_022681272.1 mRNA downstream 104237 23045386 ~ 23187224 (+) False LOC103038592
TU241665 other upstream 231047 22689001 ~ 22709557 (+) True G178388
TU241624 other upstream 394474 22544640 ~ 22546130 (+) True G178352
XR_002651459.1 other upstream 438445 22493440 ~ 22502159 (+) False LOC103022948
XR_002651460.1 other upstream 438445 22493440 ~ 22502159 (+) False LOC103022948
XR_002651462.1 other upstream 449101 22486823 ~ 22491503 (+) False hnrnpdl
TU241823 other downstream 22298 22963447 ~ 22964989 (+) True G178485
XR_002651470.1 other downstream 762838 23703987 ~ 23707849 (+) True LOC111195073
TU242273 other downstream 1506731 24447880 ~ 24454622 (+) False LOC103032894
trnam-cau_40 other downstream 1560725 24501874 ~ 24501945 (+) True trnam-cau_40
TU243054 other downstream 3972737 26913886 ~ 26916344 (+) False rnasek

Expression Profile