RNA id: TU241823


Basic Information

Item Value
RNA id TU241823
length 488
RNA type TUCP
GC content 0.51
exon number 2
gene id G178485
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22963447 ~ 22964989 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACTATAGCAACAGAAAACTCAAAAACCCACAACCTCTCTCTTGCTCGCACGCGCTCAAAAACTGCTATAAAAAACTCtaaatctctttctttctaactACTACTGTTTCTTCAGCTTTCTCCTCCAACTTTTTCTACAGGTTCTTTTTTGCCCCCACAGGTTACAGGCTTTCAATTTCATCAGGAAGACATCAGGAAAACACCAGGAACTCTTCCTTACCATCGGAGCCGCTTCCCGGGTTCATCAACAACATCTGTCCGTATTATGGACGGCGTCTGCGCCAGGACAGTCCCTAGACTGGCAGAccaggaggagaggaggagaggaaagaaGCGGTCCACCAGCCTGCTCTCACCCATGTCTCCTCCGGCCAAGAGGGCGAAGACCATCCGTGTTACGGACGGCGCCTGCGCAAGGACAGTCCCTAGACCGTCAGAccaggaggagaggagaagaggcAAGAAGAAGTCCACCAGCTTGCTCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241817 lncRNA upstream 6288 22950963 ~ 22957159 (+) True G178482
TU241809 lncRNA upstream 20098 22943126 ~ 22943349 (+) True G178477
TU241803 lncRNA upstream 21826 22935483 ~ 22941621 (+) True G178474
TU241808 lncRNA upstream 22298 22940604 ~ 22941149 (+) True G178476
TU241801 lncRNA upstream 32502 22930223 ~ 22930945 (+) True G178472
TU241944 lncRNA downstream 295582 23260571 ~ 23263280 (+) True G178578
XR_002651468.1 lncRNA downstream 309460 23274449 ~ 23348016 (+) False LOC111195072
XR_002651469.1 lncRNA downstream 309460 23274449 ~ 23338775 (+) True LOC111195072
TU241957 lncRNA downstream 368756 23333745 ~ 23347784 (+) False LOC111195072
TU241958 lncRNA downstream 368756 23333745 ~ 23335588 (+) False LOC111195072
XM_007255282.3 mRNA upstream 35203 22908793 ~ 22928244 (+) True slc38a9
XM_022681258.1 mRNA upstream 83133 22865141 ~ 22880314 (+) True il6st
XM_007255340.3 mRNA upstream 100064 22839508 ~ 22863383 (+) True ankrd55
XM_022681261.1 mRNA upstream 435364 22519419 ~ 22528083 (+) True LOC111195066
XM_022681262.1 mRNA upstream 447862 22509888 ~ 22515585 (+) True LOC103022635
XM_022680721.1 mRNA downstream 4 22964993 ~ 22966528 (+) True LOC111194992
XM_022680703.1 mRNA downstream 5433 22970422 ~ 22973005 (+) True LOC111194985
XM_022681271.1 mRNA downstream 30100 22995089 ~ 23187224 (+) False LOC103038592
XM_022681270.1 mRNA downstream 30101 22995090 ~ 23187224 (+) True LOC103038592
XM_022681272.1 mRNA downstream 80397 23045386 ~ 23187224 (+) False LOC103038592
TU241665 other upstream 253890 22689001 ~ 22709557 (+) True G178388
TU241624 other upstream 417317 22544640 ~ 22546130 (+) True G178352
XR_002651459.1 other upstream 461288 22493440 ~ 22502159 (+) False LOC103022948
XR_002651460.1 other upstream 461288 22493440 ~ 22502159 (+) False LOC103022948
XR_002651461.1 other upstream 471944 22486823 ~ 22491503 (+) False hnrnpdl
XR_002651470.1 other downstream 738998 23703987 ~ 23707849 (+) True LOC111195073
TU242273 other downstream 1482891 24447880 ~ 24454622 (+) False LOC103032894
trnam-cau_40 other downstream 1536885 24501874 ~ 24501945 (+) True trnam-cau_40
TU243054 other downstream 3948897 26913886 ~ 26916344 (+) False rnasek
TU243090 other downstream 4559329 27524318 ~ 27525389 (+) False LOC103038954

Expression Profile