RNA id: TU241861


Basic Information

Item Value
RNA id TU241861
length 1316
lncRNA type sense_over
GC content 0.47
exon number 7
gene id LOC111195067
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22935490 ~ 22941664 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cgctagcgttagctatcttaaaACGAGCAGTTGtaattagctacagttagctcgattacctgcagcagcacctGCTCATGCTGTTTAAGAGCTGATTCACGAGCTCCTCTCCCAGCATAATATCAATCAGCTGCAGCTTTTAAACCACGCTGTAGTTCAGTAATAAGATCGCGTTTCACCGAGAGCTGAAACAGTcagttagctaacgctagttaAAATACCCAACAGGACTGAAAGAGCTCCTCTCGGTACTCCGGTCTAATCCCGCAGGGTTTTTGTAGATATTTAACTTCAGAAtcttattaatactgaattaaagtaTGGTAATCTGGCTAATGTTAAAAAGTCAACTGGCTTTTTATCAAAacacACCGCTAGGTATACATTAACTAAAAGTGTTGCTCGCTTCTGGCTCGGGATGCGGCTGTGCACTTGGGCGCGTGCAATTCCACAGAAGCTGCAACTGGATTTTATAAAGATAAGAGAAAAGAATGCTTTCGCCGTGGATTTGACATGAAAAGGGAAGCTGGGGCAGAAGAACGAGGAGCTGTACTCTCTGGGTGAAGGAGGATTTGGCGCAGTGTTTGCAGGCTACTGACCTGAGGACCTACTGCCTGGACAACTGAAGAACCTCCCCCTGGAAGTGGCACTCATGCACATGGCTGGTGTTGACTCATTCATTGCTGGAGGGACCTCAAGCTTCTCCATAGAGCTGCTGAACTGGTCTAAGCTTCAGGATGAGGTCGTGTTGGTGATGGAGCCTATGCTCCAATGCTCTCCTTGGACCCCTTCGATTACATCCAGGCCAGCGGATGCCTGCAGGAGGAAGAAGCCAAGGTACTTCTAAGGCAGCTAGTCGAAGGCGTGATTGAGGTCCATGCCAGAGGGGTTCTGCACTGTGACCTCAACATCCTGGTTCAGATGTACAGTTTGGAACCACACCTTCATCTTCTGTTCTTCTGGACCTTTCTCATGAGTGGTTTACCCATGAGGCCAAATCCTCCACAGTGTTGCAGATAGGAATCATCCTGCTGCGTGTGAGAGGTGACCCTTCAACACCAGCACGAAGATCACCTCAAAGAAGTCTCAGATCATCTCTCCACCATCTGCTCTACGACCACCCCTAGCTAAGTATACACCACGACACAGCCACCACATCAGGCACACCTTAGTCagatttttacatttttcaatttgtgtattgacccaaggaggatgggttcctctcaaggtttctatctctctttctgagaaTTTTCTTTGCCGCTGTCTCCTTTGTGCTTACTCAAAAGAGgtttggacactttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241883 lncRNA downstream 4538 22930109 ~ 22930968 (-) True G178528
TU241872 lncRNA downstream 22237 22908792 ~ 22913269 (-) True G178521
TU241851 lncRNA downstream 55197 22870158 ~ 22880309 (-) True G178505
TU241772 lncRNA downstream 185427 22749513 ~ 22750079 (-) True G178452
TU241753 lncRNA downstream 408595 22519464 ~ 22526911 (-) True G178441
TU241912 lncRNA upstream 177629 23118708 ~ 23188801 (-) True G178550
TU241913 lncRNA upstream 186134 23127213 ~ 23188801 (-) False G178550
XR_002651467.1 lncRNA upstream 280475 23221554 ~ 23222498 (-) True LOC111195071
TU241940 lncRNA upstream 314159 23255238 ~ 23255493 (-) True G178575
TU242041 lncRNA upstream 469535 23410614 ~ 23410877 (-) True G178660
XM_022681259.1 mRNA downstream 28132 22899476 ~ 22907374 (-) True ddx4
XM_007255278.3 mRNA downstream 37961 22881124 ~ 22897545 (-) True LOC103040684
XM_015607366.2 mRNA downstream 171094 22696309 ~ 22764412 (-) True map3k1
XM_022681268.1 mRNA upstream 4082 22945161 ~ 22957202 (-) True sh2d4a
XM_022681269.1 mRNA upstream 4082 22945161 ~ 22957186 (-) False sh2d4a
XM_022681267.1 mRNA upstream 4082 22945161 ~ 22956858 (-) False sh2d4a
XM_022681277.1 mRNA upstream 315446 23256525 ~ 23403475 (-) False nrg1
XM_015607369.2 mRNA upstream 315446 23256525 ~ 23403418 (-) False nrg1
TU241770 other downstream 262823 22672132 ~ 22672683 (-) True G178450
trnam-cau_39 other downstream 399007 22536428 ~ 22536499 (-) True trnam-cau_39
trnar-ccu_33 other downstream 399172 22536262 ~ 22536334 (-) True trnar-ccu_33
trnam-cau_38 other downstream 399251 22536184 ~ 22536255 (-) True trnam-cau_38
trnam-cau_37 other downstream 400007 22535428 ~ 22535499 (-) True trnam-cau_37
TU241888 other upstream 11607 22952686 ~ 22957226 (-) False sh2d4a
TU242520 other upstream 2189903 25130982 ~ 25134156 (-) True G178982
TU242660 other upstream 2263750 25204829 ~ 25207353 (-) False LOC103025094
TU243326 other upstream 4499152 27440231 ~ 27443316 (-) True G179569
XR_002651480.1 other upstream 4522960 27464039 ~ 27464863 (-) True LOC103045184

Expression Profile