RNA id: XM_022681268.1


Basic Information

Item Value
RNA id XM_022681268.1
length 2357
RNA type mRNA
GC content 0.45
exon number 9
gene id sh2d4a
representative True

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22945161 ~ 22957226 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATAGGTGAAcacaagagacagagaaatatagagcacatagacagacagaggcaGAGACAATAGATTAGCATCTGCTTCTCAAACCTCATTCAGTCTTGTTTCTTGGTTCATTTCTTGTTAAGCAAGATTAATCCCTAGGAAATAGGTGTGCCTATTAGATAGGTACAGGAGTGCATAATTAGCTTTGACGTGCTTTACTGGCAAAGGTACATTTCCATGCAGACACTTGTGAGCATTTTGTGTACGTTTCTGCCCTGCATTCCTTTATCCAGACCTCTCTTTCAGCCTCTGGAATGAGGAAGTAGCCTGGAGGCAGTATTGGATTGTAATGGACGGAGTAATGGAAAAGACTCATTGAGGAGGAGTTGAGCTGCTTCTTCTGTGGTTCCAAACTGGGCCCTTTCACAATTCTCGACTGAGGACTGAGTTACAGGACTGCAAACATGTTGCAGCAGATTCTGAACGACATGTACATTGAGCCAGATCTGCTGGCAGAGCTGAGCGAGGAGCAGAAGCAGGTTCTGTTCTTTAAGATGAGGGAAGAGCAGGTCCGGaggtggaaagagagagaagcaaaACTGGAGAAGCAGGAGGCTGGAAaagggaaaacaaaaaaagTATCAAAGAAGACAGTGTCATGGATGAAGAGTTCAGACAACGATGTTTGGGTTTGGGTTATGGGAGAACACCCTGATGATAAGACCTACGACCAGATCTGTGATGAGATCATGGCGGAGAGAGCAGCTCTGCAGGCGCAGAAAGAAGCAGACGAActcagAGCTAAAAAAGAGGCTGAACTGGAGAAGCGGTTCTCTGGTTTGTATCTGGAGCAAGAGGAGGCAGCCAGAAAAGAGGAGGCCCGGAAGGCAGCTGCCCTGGAGCAGAGCAGACAGGAGGAGCTCAAGAAGCGAGaggcggaggagaggaggaaagCTGAAGAGGAGCTAAAGAGGCTGGAGGAGGAGAGAGCCCAGCAGATCTATCTGGACCTGAAGCAGGTTAATCACCAGAAGAAAGGGCAAGACAAGGAGGAGAAAGCCTGGCAGGACTCATTGCGTAAATCCAAAGCGGCTGATCAGCGCAGACGATCTCTGGCTAAACAGACTATAGACGACCACCGCAGGCGTTCGGTGAAAGCCCTGGAGAGAGGGAAAGTGGCAGCTATGATGAAAAATTTTGGAGCAAAGAAATCTGCCCCACCTCCTCAGCCCAAACCCAGAAACCTCACTCTGGCCAGCGAACCCATTCAACAGAAGCCAGGTATGCACCGGTCGCTGTCGACGTCCAGCAGGGAGGAAATTATTCGCTGGTTTAAAGAGGAGCAGACACTCAGAGTTTGTTTACAGCAAGACGAGAGTCGAGTTGCCCCCTGGTTTCATGGTATTATTACTCGTGAGGAGGCGGAGGATTTGCTGAAGTCAGGCAGCGCTGGAAGCTTTCTGGTCCGTGTTAGCGAGAGGATATTTGGATATGTTCTTTCTTACAGAAGCCAAGACGAATTCAAGCATTTCCTCATTGATGTCACAGACGGCTGCTTCATGCTGCTGGGAGACCAGATCAAGTTCACTTCTCTGGGAGAACTAGTGGTCTACCATCAGGAGGAGCCTTTAACTCCATCTGGAGGGGAGCGGCTGGTGAATGCATGTGGACAGAAGCCTGGAACTGTGGACTATGCTGATCTGTTCACCTGAGTGAGGTCCAGCCTCCAAAACTCAGGGACTCTAAGACGTAACCTGCTCCTCAGGTTTTTTAATACAACAGGATTCCTTGCTTTTCCAAAAGCAGATCTTGAAGGACTGTAGACTGAACGTGTGTTTTTGGTCATGCCTTCTTTGCCaagtattaaataattattataacattCTGATTTGGGCCGTTATCACACCTGCACTTTTAGTTAACTTTTAGTTAAGTTGGACTCTTGGTGCAATTCATTTGAGCAGATATGAATAGAGAAATCACACTCGAAGCAAAACACCTGCTGCGAGAACTTTCTTGCTTCCATCCCAGATAGGTCTATCCAAAAGACCAGAAAGTGGAGAGAATATTACGTTTATTAATGGACAAACTCTAACTCTAGGTTGTGAAAACCCCTAAATCAATCACAGTCTAAAAAAATCTGCATGATGAAAATATTCGTTTCAATTGTACAGGAAGTCACCAAGTGCATTTTATGATAATAGGATGGATTTAAAGGTTTtagttttgcagttttttttttttgccactgatGTATTTTACTGCGCATTTGCCTTGGTCAGGTGAGCTAGTAATGTGGTATTTCTTATAGATttttctgttaattaatgtaggAATTGAACTTACTGTGTTCAGTACAATttgaacaacacaaaaa

Function

GO: NA

KEGG:

id description
K17577 SH2D4A; SH2 domain-containing protein 4A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241862 lncRNA downstream 3497 22935506 ~ 22941664 (-) False LOC111195067
TU241861 lncRNA downstream 4082 22935506 ~ 22941079 (-) True LOC111195067
TU241859 lncRNA downstream 4628 22935506 ~ 22940533 (-) False LOC111195067
TU241860 lncRNA downstream 4628 22936526 ~ 22940533 (-) False LOC111195067
TU241883 lncRNA downstream 14193 22930109 ~ 22930968 (-) True G178528
TU241912 lncRNA upstream 161506 23118708 ~ 23188801 (-) True G178550
TU241913 lncRNA upstream 170011 23127213 ~ 23188801 (-) False G178550
XR_002651467.1 lncRNA upstream 264352 23221554 ~ 23222498 (-) True LOC111195071
TU241940 lncRNA upstream 298036 23255238 ~ 23255493 (-) True G178575
TU242041 lncRNA upstream 453412 23410614 ~ 23410877 (-) True G178660
XM_022681266.1 mRNA downstream 4650 22936558 ~ 22940511 (-) False LOC111195067
XM_022681259.1 mRNA downstream 37787 22899476 ~ 22907374 (-) True ddx4
XM_007255278.3 mRNA downstream 47616 22881124 ~ 22897545 (-) True LOC103040684
XM_015607366.2 mRNA downstream 180749 22696309 ~ 22764412 (-) True map3k1
XM_022681277.1 mRNA upstream 299323 23256525 ~ 23403475 (-) False nrg1
XM_015607369.2 mRNA upstream 299323 23256525 ~ 23403418 (-) False nrg1
XM_022681274.1 mRNA upstream 299323 23256525 ~ 23403182 (-) False nrg1
XM_022681275.1 mRNA upstream 299323 23256525 ~ 23403182 (-) False nrg1
XM_022681276.1 mRNA upstream 299323 23256525 ~ 23403182 (-) False nrg1
XR_002651463.1 other downstream 4650 22935490 ~ 22940511 (-) False LOC111195067
TU241770 other downstream 272478 22672132 ~ 22672683 (-) True G178450
trnam-cau_39 other downstream 408662 22536428 ~ 22536499 (-) True trnam-cau_39
trnar-ccu_33 other downstream 408827 22536262 ~ 22536334 (-) True trnar-ccu_33
trnam-cau_38 other downstream 408906 22536184 ~ 22536255 (-) True trnam-cau_38
TU242520 other upstream 2173780 25130982 ~ 25134156 (-) True G178982
TU242660 other upstream 2247627 25204829 ~ 25207353 (-) False LOC103025094
TU243326 other upstream 4483029 27440231 ~ 27443316 (-) True G179569
XR_002651480.1 other upstream 4506837 27464039 ~ 27464863 (-) True LOC103045184
TU243317 other upstream 4516153 27473355 ~ 27477978 (-) False ift46

Expression Profile