RNA id: XR_002651468.1


Basic Information

Item Value
RNA id XR_002651468.1
length 648
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id LOC111195072
representative False

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 23274449 ~ 23348016 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTAATGGATCCACGCATCTGCGGATTACTGATGAAGCAGAATGTGTGAAAGGCTGAAGAGCACACATTCCACCTCCACGTAGATGCTTGCTGAGCTGCTGGAGTAAGGCTGAGTATGAGCAGGGACTTTTTTGCTGATGCAGCTGCGTTCAGCTGGAGTTGATTGAACCGAGAGTCGAGACTTTCTTGCCGTGGGCCAAAAGCAGGCTGGCCGAGAGCTTTAGAGAAGAATGAAGATTCTAAATCTTACAGTTAAAAGGACAAGCCACCACGGCGTCTGCAGAGAGACGGATGAGACGTGGCATATCATTAGGTTTAGCTGGGCTCTGAGTCTCTGGGGGTCTCTGAGAGTCGTTCCTCACGGTTGGAGAAGCTCTGCTACACCTTCCTCCTCCAGCGCGGTGCTCTCCGGCAGCGCGGCTCCCTCAGCGGGAGGGAGTTTTACAGCCCCGGAGAGAGAGGCGGGCTCTCTACAGCCCCGTGCACAACTTCAACCACCCCTGATCAAATTACAGATGATTttctaactgaaaaaaaaaaagttttaattggacaaactgtagtaaaaaaaaaaaaaagcttgtgtTCATTGTTACTTTTCTCAATAAGTTGTATGCATTCTTTCACATTAAATAAGCAGGCACCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241944 lncRNA upstream 11169 23260571 ~ 23263280 (+) True G178578
TU241817 lncRNA upstream 317290 22950963 ~ 22957159 (+) True G178482
TU241809 lncRNA upstream 331100 22943126 ~ 22943349 (+) True G178477
TU241803 lncRNA upstream 332828 22935483 ~ 22941621 (+) True G178474
TU241808 lncRNA upstream 333300 22940604 ~ 22941149 (+) True G178476
TU241988 lncRNA downstream 49007 23397023 ~ 23397235 (+) True G178614
TU241990 lncRNA downstream 54954 23402970 ~ 23403734 (+) True G178616
TU241991 lncRNA downstream 63089 23411105 ~ 23418343 (+) True G178617
TU241999 lncRNA downstream 77139 23425155 ~ 23426497 (+) True G178623
TU242000 lncRNA downstream 79369 23427385 ~ 23432711 (+) True G178624
XM_007255267.3 mRNA upstream 57191 23203476 ~ 23217258 (+) True fut10
XM_022681271.1 mRNA upstream 87225 22995089 ~ 23187224 (+) False LOC103038592
XM_022681283.1 mRNA downstream 111352 23459368 ~ 23461975 (+) True purg
XM_022680722.1 mRNA downstream 131521 23479537 ~ 23494300 (+) True LOC111188215
XM_022681284.1 mRNA downstream 146138 23494154 ~ 23497618 (+) True LOC103034079
XM_022681285.1 mRNA downstream 155291 23503307 ~ 23514711 (+) True ppp2cb
XM_007255251.3 mRNA downstream 155291 23503307 ~ 23514711 (+) False ppp2cb
TU241823 other upstream 309460 22963447 ~ 22964989 (+) True G178485
TU241665 other upstream 564892 22689001 ~ 22709557 (+) True G178388
TU241624 other upstream 728319 22544640 ~ 22546130 (+) True G178352
XR_002651459.1 other upstream 772290 22493440 ~ 22502159 (+) False LOC103022948
XR_002651470.1 other downstream 355971 23703987 ~ 23707849 (+) True LOC111195073
TU242273 other downstream 1099864 24447880 ~ 24454622 (+) False LOC103032894
trnam-cau_40 other downstream 1153858 24501874 ~ 24501945 (+) True trnam-cau_40
TU243054 other downstream 3565870 26913886 ~ 26916344 (+) False rnasek
TU243090 other downstream 4176302 27524318 ~ 27525389 (+) False LOC103038954

Expression Profile